| Match | Date | Opponent | Venue | Result | Attendance | Scorers |
| 1 | 9 August 2008 | Gillingham | H | 1–1 | 5,377 | Anderton 42 |
| 2 | 16 August 2008 | Aldershot Town | A | 1–1 | 4,564 | Sappleton 81 |
| 3 | 23 August 2008 | Exeter City | H | 0–1 | 5,350 | |
| 4 | 30 August 2008 | Port Vale | A | 1–3 | 6,048 | Lindfield 58 |
| 5 | 6 September 2008 | Notts County | A | 1–1 | 4,362 | Pitman 19 |
| 6 | 13 September 2008 | Macclesfield Town | H | 0–1 | 3,922 | |
| 7 | 20 September 2008 | Bradford City | A | 3–1 | 12,824 | Hollands 39, Goulding 54, Pearce 70 |
| 8 | 27 September 2008 | Darlington | H | 3–1 | 4,124 | Bartley 15, Austin (og) 37, Pitman 90 |
| 9 | 4 October 2008 | Wycombe Wanderers | A | 1–3 | 5,005 | Hollands 57 |
| 10 | 11 October 2008 | Rotherham United | H | 0–0 | 4,530 | |
| 11 | 18 October 2008 | Shrewsbury Town | A | 1–4 | 5,738 | Pitman 60 |
| 12 | 21 October 2008 | Dagenham & Redbridge | H | 2–1 | 3,554 | Bradbury 24, Pitman 31 |
| 13 | 25 October 2008 | Lincoln City | H | 0–1 | 4,464 | |
| 14 | 1 November 2008 | Chesterfield | H | 1–1 | 4,082 | Goodall (og) 82 |
| 15 | 15 November 2008 | Accrington Stanley | A | 0–3 | 1,152 | |
| 16 | 21 November 2008 | Grimsby Town | A | 3–3 | 4,353 | Bradbury 6, 89, Anderton 79 |
| 17 | 25 November 2008 | Morecambe | H | 0–0 | 3,068 | |
| 18 | 2 December 2008 | Luton Town | A | 3–3 | 6,773 | Molesley 20, 51, Tubbs 76 |
| 19 | 6 December 2008 | Chester City | H | 1–0 | 4,154 | Anderton 88 |
| 20 | 13 December 2008 | Rochdale | A | 1–1 | 2,285 | Bradbury (p) 45 |
| 21 | 20 December 2008 | Bury | H | 2–0 | 3,479 | Igoe 39, Partington 44 |
| 22 | 26 December 2008 | Brentford | A | 0–2 | 6,450 | |
| 23 | 28 December 2008 | Barnet | H | 0–2 | 4,725 | |
| 24 | 3 January 2009 | Darlington | A | 1–2 | 2,571 | Hollands 29 |
| 25 | 17 January 2009 | Rotherham United | A | 0–1 | 3,270 | |
| 26 | 24 January 2009 | Wycombe Wanderers | H | 3–1 | 5,946 | Pitman 24, Pearce 32, Thomson 64 |
| 27 | 27 January 2009 | Luton Town | H | 1–1 | 5,230 | Hollands 29 |
| 28 | 31 January 2009 | Lincoln City | A | 3–3 | 3,634 | Molesley 36, Pitman (p) 65, (p) 77 |
| 29 | 7 February 2009 | Shrewsbury Town | H | 1–0 | 4,187 | Pitman 23 |
| 30 | 14 February 2009 | Accrington Stanley | H | 1–0 | 4,109 | Pitman 86 |
| 31 | 20 February 2009 | Chesterfield | A | 0–1 | 3,130 | |
| 32 | 24 February 2009 | Dagenham & Redbridge | A | 1–0 | 1,602 | Molesley 90 |
| 33 | 28 February 2009 | Gillingham | A | 0–1 | 5,353 | |
| 34 | 3 March 2009 | Aldershot Town | H | 2–0 | 4,556 | Hollands 39, Fletcher 56 |
| 35 | 7 March 2009 | Port Vale | H | 0–0 | 5,924 | |
| 36 | 10 March 2009 | Exeter City | A | 3–1 | 4,946 | Hollands 56, Pitman 59, 87 |
| 37 | 14 March 2009 | Macclesfield Town | A | 2–0 | 1,589 | Bradbury 50, 70 |
| 38 | 17 March 2009 | Bradford City | H | 4–1 | 4,847 | Fletcher 4, 39, Goulding 40, 51 |
| 39 | 21 March 2009 | Notts County | H | 0–1 | 5,510 | |
| 40 | 28 March 2009 | Bury | A | 0–1 | 2,762 | |
| 41 | 5 April 2009 | Rochdale | H | 4–0 | 5,092 | Pitman 12, 67, 90, Feeney 25 |
| 42 | 11 April 2009 | Barnet | A | 0–1 | 3,133 | |
| 43 | 13 April 2009 | Brentford | H | 0–1 | 8,168 | |
| 44 | 18 April 2009 | Chester City | A | 2–0 | 3,349 | Pitman 3, Robinson 79 |
| 45 | 25 April 2009 | Grimsby Town | H | 2–1 | 9,008 | Feeney 47, Fletcher 80 |
| 46 | 2 May 2009 | Morecambe | A | 4–0 | 2,601 | Ward 7, Feeney 36, Pitman 43, 69 |
