BHLHA9

Protein-coding gene in the species Homo sapiens
BHLHA9
Identifiers
AliasesBHLHA9, BHLHF42, basic helix-loop-helix family member a9, CCSPD
External IDsOMIM: 615416 MGI: 2444198 HomoloGene: 82363 GeneCards: BHLHA9
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for BHLHA9
Genomic location for BHLHA9
Band17p13.3Start1,270,444 bp[1]
End1,271,815 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for BHLHA9
Genomic location for BHLHA9
Band11|11 B5Start76,563,296 bp[2]
End76,564,502 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Brodmann area 9

  • prefrontal cortex

  • superior frontal gyrus

  • hypothalamus

  • temporal lobe

  • amygdala

  • hippocampus proper

  • liver

  • right lobe of liver

  • substantia nigra
Top expressed in
  • spinal ganglia

  • lip

  • female urethra

  • skin of limb

  • autopod skin

  • skin of abdomen

  • skin of back

  • abdominal wall

  • superior frontal gyrus

  • hippocampus proper
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • DNA binding
  • protein binding
  • protein dimerization activity
  • protein heterodimerization activity
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • cytoplasm
  • nucleus
Biological process
  • multicellular organism development
  • regulation of transcription, DNA-templated
  • transcription, DNA-templated
  • regulation of transcription by RNA polymerase II
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

727857

320522

Ensembl

ENSG00000205899

ENSMUSG00000044243

UniProt

Q7RTU4

Q5RJB0

RefSeq (mRNA)

NM_001164405

NM_177182

RefSeq (protein)

NP_001157877

NP_796156

Location (UCSC)Chr 17: 1.27 – 1.27 MbChr 11: 76.56 – 76.56 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Basic helix-loop-helix family, member a9 is a protein in humans that is encoded by the BHLHA9 gene.[5]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000205899 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000044243 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Basic helix-loop-helix family, member a9". Retrieved 2012-04-26.

External links

Further reading

  • Stevens JD, Roalson EH, Skinner MK (Nov 2008). "Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation". Differentiation; Research in Biological Diversity. 76 (9): 1006–22. doi:10.1111/j.1432-0436.2008.00285.x. PMC 5728086. PMID 18557763.
  • McLellan AS, Langlands K, Kealey T (Dec 2002). "Exhaustive identification of human class II basic helix-loop-helix proteins by virtual library screening". Mechanisms of Development. 119 (Suppl 1): S285-91. doi:10.1016/S0925-4773(03)00130-8. PMID 14516699. S2CID 5903576.
  • McLellan AS, Langlands K, Kealey T (Dec 2002). "Exhaustive identification of human class II basic helix-loop-helix proteins by virtual library screening". Gene Expression Patterns. 2 (3–4): 329–35. doi:10.1016/S0925-4773(02)00390-8. PMID 12617822.
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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