DNA Data Bank of Japan
The DNA Data Bank of Japan (DDBJ) is a biological database that collects DNA sequences.[1][2] It is located at the National Institute of Genetics (NIG) in the Shizuoka prefecture of Japan. It is also a member of the International Nucleotide Sequence Database Collaboration or INSDC. It exchanges its data with European Molecular Biology Laboratory at the European Bioinformatics Institute and with GenBank at the National Center for Biotechnology Information on a daily basis. Thus these three databanks contain the same data at any given time.
History
DDBJ began data bank activities in 1987[3] at NIG and remains the only nucleotide sequence data bank in Asia.[4]
Organisation
Although DDBJ mainly receives its data from Japanese researchers, it can accept data from contributors from any other country. DDBJ is primarily funded by the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT). DDBJ has an international advisory committee which consists of nine members, 3 members each from Europe, US, and Japan. This committee advises DDBJ about its maintenance, management and future plans once a year. Apart from this, DDBJ also has an international collaborative committee which advises on various technical issues related to international collaboration and consists of working-level participants.[citation needed]
See also
- National Center for Biotechnology Information (NCBI)
- European Bioinformatics Institute (EBI)
References
- ^ Tateno Y, Imanishi T, Miyazaki S, Fukami-Kobayashi K, Saitou N, Sugawara H, et al. (2002). "DNA Data Bank of Japan (DDBJ) for genome scale research in life science". Nucleic Acids Res. 30 (1): 27–30. doi:10.1093/nar/30.1.27. PMC 99140. PMID 11752245.
- ^ Kaminuma E, Kosuge T, Kodama Y, et al. (January 2011). "DDBJ progress report". Nucleic Acids Res. 39 (Database issue): D22–7. doi:10.1093/nar/gkq1041. PMC 3013661. PMID 21062814.
- ^ Tateno, Y.; Gojobori, T. (1 January 1997). "DNA Data Bank of Japan in the age of information biology". Nucleic Acids Research. 25 (1): 14–17. doi:10.1093/nar/25.1.14. PMC 146410. PMID 9016494.
- ^ Sagar Aryal Nucleotide sequences database 22 February 2019 microbenotes.com accessed 26 March 2021
External links
- Official site
- DDBJ entry in MetaBase.
- v
- t
- e
- Sequence databases: GenBank, European Nucleotide Archive, DNA Data Bank of Japan and China National GeneBank
- Secondary databases: UniProt, database of protein sequences grouping together Swiss-Prot, TrEMBL and Protein Information Resource
- Other databases: BioNumbers, Protein Data Bank, Ensembl, InterPro, KEGG, and Gene Ontology
- Specialised genomic databases: BOLD, Saccharomyces Genome Database, FlyBase, VectorBase, WormBase, Rat Genome Database, PHI-base, Arabidopsis Information Resource, GISAID and Zebrafish Information Network
- Server: ExPASy
- Rosalind (education platform)
- Broad Institute
- Computational Biology Department (CBD)
- Microsoft Research - University of Trento Centre for Computational and Systems Biology (COSBI)
- Database Center for Life Science (DBCLS)
- DNA Data Bank of Japan (DDBJ)
- European Bioinformatics Institute (EMBL-EBI)
- European Molecular Biology Laboratory (EMBL)
- Flatiron Institute
- J. Craig Venter Institute (JCVI)
- Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)
- US National Center for Biotechnology Information (NCBI)
- Japanese Institute of Genetics
- Netherlands Bioinformatics Centre (NBIC)
- Philippine Genome Center (PGC)
- Scripps Research
- Swiss Institute of Bioinformatics (SIB)
- Wellcome Sanger Institute
- Whitehead Institute
- African Society for Bioinformatics and Computational Biology (ASBCB)
- Australia Bioinformatics Resource (EMBL-AR)
- European Molecular Biology network (EMBnet)
- International Nucleotide Sequence Database Collaboration (INSDC)
- International Society for Biocuration (ISB)
- International Society for Computational Biology (ISCB)
- Student Council (ISCB-SC)
- Institute of Genomics and Integrative Biology (CSIR-IGIB)
- Japanese Society for Bioinformatics (JSBi)
- Basel Computational Biology Conference ([BC2])
- European Conference on Computational Biology (ECCB)
- Intelligent Systems for Molecular Biology (ISMB)
- International Conference on Bioinformatics (InCoB)
- International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB)
- ISCB Africa ASBCB Conference on Bioinformatics
- Pacific Symposium on Biocomputing (PSB)
- Research in Computational Molecular Biology (RECOMB)
- CRAM format
- FASTA format
- FASTQ format
- NeXML format
- Nexus format
- Pileup format
- SAM format
- Stockholm format
- VCF format
- GFF format
- Category
- Commons