FOXF1

Protein-coding gene in the species Homo sapiens
FOXF1
Identifiers
AliasesFOXF1, ACDMPV, FKHL5, FREAC1, forkhead box F1
External IDsOMIM: 601089 MGI: 1347470 HomoloGene: 1114 GeneCards: FOXF1
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for FOXF1
Genomic location for FOXF1
Band16q24.1Start86,510,527 bp[1]
End86,515,422 bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for FOXF1
Genomic location for FOXF1
Band8 E1|8 70.31 cMStart121,811,125 bp[2]
End121,814,883 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastric mucosa

  • right lung

  • lower lobe of lung

  • urinary bladder

  • mucosa of urinary bladder

  • upper lobe of lung

  • upper lobe of left lung

  • pylorus

  • fundus

  • urethra
Top expressed in
  • right lung lobe

  • left lung lobe

  • molar

  • somatopleuric mesenchyme

  • urinary bladder

  • yolk sac

  • abdominal wall

  • sclerotome

  • allantois

  • left colon
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • DNA binding
  • sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding
  • DNA-binding transcription factor activity
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • transcription regulator complex
  • nucleus
Biological process
  • somitogenesis
  • regulation of smooth muscle cell differentiation
  • renal system development
  • ureter development
  • regulation of transcription, DNA-templated
  • lung morphogenesis
  • embryonic foregut morphogenesis
  • lung development
  • positive regulation of cell migration
  • endocardial cushion development
  • cellular response to organic cyclic compound
  • extracellular matrix organization
  • cardiac left ventricle morphogenesis
  • in utero embryonic development
  • negative regulation of transcription by RNA polymerase II
  • negative regulation of mast cell degranulation
  • smooth muscle cell differentiation
  • morphogenesis of a branching structure
  • venous blood vessel development
  • cellular response to cytokine stimulus
  • right lung morphogenesis
  • transcription, DNA-templated
  • vasculogenesis
  • positive regulation of transcription, DNA-templated
  • respiratory tube development
  • heart development
  • determination of left/right symmetry
  • establishment of epithelial cell apical/basal polarity
  • blood vessel development
  • embryonic ectodermal digestive tract morphogenesis
  • positive regulation of mesenchymal cell proliferation
  • embryonic digestive tract morphogenesis
  • animal organ morphogenesis
  • pancreas development
  • detection of wounding
  • mesenchyme migration
  • smoothened signaling pathway
  • lateral mesodermal cell differentiation
  • lung alveolus development
  • digestive tract development
  • lung vasculature development
  • mesoderm development
  • epithelial tube branching involved in lung morphogenesis
  • negative regulation of inflammatory response
  • lung lobe morphogenesis
  • ductus arteriosus closure
  • embryonic digestive tract development
  • positive regulation of transcription by RNA polymerase II
  • epithelial cell differentiation involved in mammary gland alveolus development
  • midgut development
  • positive regulation of cell-substrate adhesion
  • transcription by RNA polymerase II
  • cell differentiation
  • cell-cell adhesion
  • trachea development
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2294

15227

Ensembl

ENSG00000103241

ENSMUSG00000042812

UniProt

Q12946

Q61080

RefSeq (mRNA)

NM_001451

NM_010426

RefSeq (protein)

NP_001442

NP_034556

Location (UCSC)Chr 16: 86.51 – 86.52 MbChr 8: 121.81 – 121.81 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Forkhead box protein F1 (FOXF1) is a protein that in humans is encoded by the FOXF1 gene.[5][6][7]

Function

This gene belongs to the forkhead family of transcription factors which is characterized by a distinct forkhead domain. FOX1 protein is important in the development of the pulmonary mesenchyme and the development of the gastrointestinal tract.[8]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000103241 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000042812 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Larsson C, Hellqvist M, Pierrou S, White I, Enerbäck S, Carlsson P (Dec 1995). "Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12)". Genomics. 30 (3): 464–9. doi:10.1006/geno.1995.1266. PMID 8825632.
  6. ^ Pierrou S, Hellqvist M, Samuelsson L, Enerbäck S, Carlsson P (Oct 1994). "Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending". The EMBO Journal. 13 (20): 5002–12. doi:10.1002/j.1460-2075.1994.tb06827.x. PMC 395442. PMID 7957066.
  7. ^ "Entrez Gene: FOXF1 forkhead box F1".
  8. ^ "FOXF1 gene: MedlinePlus Genetics". medlineplus.gov. Retrieved 2021-06-10.

Further reading

  • Murphy DB, Wiese S, Burfeind P, Schmundt D, Mattei MG, Schulz-Schaeffer W, Thies U (Jun 1994). "Human brain factor 1, a new member of the fork head gene family". Genomics. 21 (3): 551–7. doi:10.1006/geno.1994.1313. PMID 7959731.
  • Hellqvist M, Mahlapuu M, Samuelsson L, Enerbäck S, Carlsson P (Feb 1996). "Differential activation of lung-specific genes by two forkhead proteins, FREAC-1 and FREAC-2". The Journal of Biological Chemistry. 271 (8): 4482–90. doi:10.1074/jbc.271.8.4482. PMID 8626802.
  • Hellqvist M, Mahlapuu M, Blixt A, Enerbäck S, Carlsson P (Sep 1998). "The human forkhead protein FREAC-2 contains two functionally redundant activation domains and interacts with TBP and TFIIB". The Journal of Biological Chemistry. 273 (36): 23335–43. doi:10.1074/jbc.273.36.23335. PMID 9722567.
  • Mahlapuu M, Pelto-Huikko M, Aitola M, Enerbäck S, Carlsson P (Oct 1998). "FREAC-1 contains a cell-type-specific transcriptional activation domain and is expressed in epithelial-mesenchymal interfaces". Developmental Biology. 202 (2): 183–95. doi:10.1006/dbio.1998.9010. PMID 9769171.
  • Coon DR, Roberts DJ, Loscertales M, Kradin R (Apr 2006). "Differential epithelial expression of SHH and FOXF1 in usual and nonspecific interstitial pneumonia". Experimental and Molecular Pathology. 80 (2): 119–23. doi:10.1016/j.yexmp.2005.12.003. PMID 16448649.
  • Lomenick JP, Hubert MA, Handwerger S (Nov 2006). "Transcription factor FOXF1 regulates growth hormone variant gene expression". American Journal of Physiology. Endocrinology and Metabolism. 291 (5): E947-51. doi:10.1152/ajpendo.00128.2006. PMID 16772323.

External links


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This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies