GNAT1

Protein-coding gene in the species Homo sapiens
GNAT1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

3RBQ

Identifiers
AliasesGNAT1, CSNBAD3, GBT1, GNATR, CSNB1G, G protein subunit alpha transducin 1, HG1F
External IDsOMIM: 139330 MGI: 95778 HomoloGene: 20084 GeneCards: GNAT1
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for GNAT1
Genomic location for GNAT1
Band3p21.31Start50,191,610 bp[1]
End50,197,696 bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for GNAT1
Genomic location for GNAT1
Band9 F1|9 58.86 cMStart107,551,673 bp[2]
End107,556,911 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • choroid

  • right lobe of liver

  • retina

  • retinal pigment epithelium

  • prefrontal cortex

  • spinal cord

  • hippocampal formation

  • blood

  • temporal lobe

  • mesencephalon
Top expressed in
  • retinal pigment epithelium

  • iris

  • morula

  • ciliary body

  • blastocyst

  • outer nuclear layer

  • conjunctival fornix

  • corneal stroma

  • left lobe of liver

  • proximal tubule
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
  • nucleotide binding
  • GDP binding
  • metal ion binding
  • acyl binding
  • guanyl nucleotide binding
  • G protein-coupled receptor binding
  • protein kinase binding
  • signal transducer activity
  • GTP binding
  • G-protein beta/gamma-subunit complex binding
  • GTPase activity
Cellular component
  • cytoplasm
  • cytosol
  • plasma membrane
  • photoreceptor connecting cilium
  • neuronal cell body
  • apical plasma membrane
  • photoreceptor disc membrane
  • photoreceptor outer segment membrane
  • photoreceptor outer segment
  • heterotrimeric G-protein complex
  • photoreceptor inner segment
  • membrane
  • cell projection
Biological process
  • response to light stimulus
  • response to stimulus
  • regulation of rhodopsin mediated signaling pathway
  • detection of chemical stimulus involved in sensory perception of bitter taste
  • detection of light stimulus involved in visual perception
  • retina development in camera-type eye
  • eye photoreceptor cell development
  • response to light intensity
  • negative regulation of cyclic-nucleotide phosphodiesterase activity
  • cell population proliferation
  • positive regulation of cyclic-nucleotide phosphodiesterase activity
  • phototransduction
  • cellular response to electrical stimulus
  • signal transduction
  • protein folding
  • adenylate cyclase-modulating G protein-coupled receptor signaling pathway
  • phototransduction, visible light
  • rhodopsin mediated signaling pathway
  • sensory perception of umami taste
  • visual perception
  • G protein-coupled receptor signaling pathway
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2779

14685

Ensembl

ENSG00000114349

ENSMUSG00000034837

UniProt

P11488

P20612

RefSeq (mRNA)

NM_000172
NM_144499

NM_008140

RefSeq (protein)

NP_000163
NP_653082

NP_032166

Location (UCSC)Chr 3: 50.19 – 50.2 MbChr 9: 107.55 – 107.56 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Guanine nucleotide-binding protein G(t) subunit alpha-1 is a protein that in humans is encoded by the GNAT1 gene.[5]

Transducin is a 3-subunit guanine nucleotide-binding protein (G protein) which stimulates the coupling of rhodopsin and cGMP-phosphodiesterase during visual impulses. The transducin alpha subunits in rods and cones are encoded by separate genes. This gene encodes the alpha subunit in rods. Alternative splicing of this gene results in two transcript variants.[5]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000114349 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000034837 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b "Entrez Gene: GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1".

Further reading

  • Wilkie TM, Gilbert DJ, Olsen AS, et al. (1993). "Evolution of the mammalian G protein alpha subunit multigene family". Nat. Genet. 1 (2): 85–91. doi:10.1038/ng0592-85. PMID 1302014. S2CID 31888533.
  • Bourne HR, Sanders DA, McCormick F (1991). "The GTPase superfamily: conserved structure and molecular mechanism". Nature. 349 (6305): 117–27. Bibcode:1991Natur.349..117B. doi:10.1038/349117a0. PMID 1898771. S2CID 4349901.
  • Fong SL (1992). "Characterization of the human rod transducin alpha-subunit gene". Nucleic Acids Res. 20 (11): 2865–70. doi:10.1093/nar/20.11.2865. PMC 336934. PMID 1614872.
  • Lerea CL, Bunt-Milam AH, Hurley JB (1990). "Alpha transducin is present in blue-, green-, and red-sensitive cone photoreceptors in the human retina". Neuron. 3 (3): 367–76. doi:10.1016/0896-6273(89)90261-4. PMID 2534964. S2CID 2870440.
  • Van Dop C, Medynski DC, Apone LM (1989). "Nucleotide sequence for a cDNA encoding the alpha subunit of retinal transducin (GNAT1) isolated from the human eye". Nucleic Acids Res. 17 (12): 4887. doi:10.1093/nar/17.12.4887. PMC 318051. PMID 2748346.
  • Blatt C, Eversole-Cire P, Cohn VH, et al. (1988). "Chromosomal localization of genes encoding guanine nucleotide-binding protein subunits in mouse and human". Proc. Natl. Acad. Sci. U.S.A. 85 (20): 7642–6. Bibcode:1988PNAS...85.7642B. doi:10.1073/pnas.85.20.7642. PMC 282248. PMID 2902634.
  • Ngo JT, Bateman JB, Klisak I, et al. (1994). "Regional mapping of a human rod alpha-transducin (GNAT1) gene to chromosome 3p22". Genomics. 18 (3): 724–5. doi:10.1016/S0888-7543(05)80384-2. PMID 8307584.
  • Dryja TP, Hahn LB, Reboul T, Arnaud B (1996). "Missense mutation in the gene encoding the alpha subunit of rod transducin in the Nougaret form of congenital stationary night blindness". Nat. Genet. 13 (3): 358–60. doi:10.1038/ng0796-358. PMID 8673138. S2CID 30551750.
  • Chen CK, Wieland T, Simon MI (1996). "RGS-r, a retinal specific RGS protein, binds an intermediate conformation of transducin and enhances recycling". Proc. Natl. Acad. Sci. U.S.A. 93 (23): 12885–9. Bibcode:1996PNAS...9312885C. doi:10.1073/pnas.93.23.12885. PMC 24015. PMID 8917514.
  • Seibert C, Harteneck C, Ernst OP, et al. (2000). "Activation of the rod G-protein Gt by the thrombin receptor (PAR1) expressed in Sf9 cells". Eur. J. Biochem. 266 (3): 911–6. doi:10.1046/j.1432-1327.1999.00927.x. PMID 10583385.
  • Wieland T, Bahtijari N, Zhou XB, et al. (2000). "Polarity exchange at the interface of regulators of G protein signaling with G protein alpha-subunits". J. Biol. Chem. 275 (37): 28500–6. doi:10.1074/jbc.M004187200. PMID 10878019.
  • Bell MW, Desai N, Guo XX, Ghalayini AJ (2000). "Tyrosine phosphorylation of the alpha subunit of transducin and its association with Src in photoreceptor rod outer segments". J. Neurochem. 75 (5): 2006–19. doi:10.1046/j.1471-4159.2000.0752006.x. PMID 11032890. S2CID 17501930.
  • Hu G, Wensel TG (2002). "R9AP, a membrane anchor for the photoreceptor GTPase accelerating protein, RGS9-1". Proc. Natl. Acad. Sci. U.S.A. 99 (15): 9755–60. Bibcode:2002PNAS...99.9755H. doi:10.1073/pnas.152094799. PMC 125004. PMID 12119397.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Muzny DM, Scherer SE, Kaul R, et al. (2006). "The DNA sequence, annotation and analysis of human chromosome 3". Nature. 440 (7088): 1194–8. Bibcode:2006Natur.440.1194M. doi:10.1038/nature04728. PMID 16641997.

External links

  • Overview of all the structural information available in the PDB for UniProt: P11488 (Guanine nucleotide-binding protein G(t) subunit alpha-1) at the PDBe-KB.
  • v
  • t
  • e
MAP
  • see MAP kinase pathway
CalciumG protein
Heterotrimeric
cAMP:
cGMP:
Monomeric
CyclinLipidOther protein kinase
Serine/threonine:
Tyrosine:
Serine/threonine/tyrosine
Arginine
Other protein phosphatase
Serine/threonine:
Tyrosine:
both:
Apoptosis
  • see apoptosis signaling pathway
GTP-binding protein regulators
  • see GTP-binding protein regulators
Other
see also deficiencies of intracellular signaling peptides and proteins
  • v
  • t
  • e
  • 1fqj: CRYSTAL STRUCTURE OF THE HETEROTRIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, THE GAMMA SUBUNIT OF PHOSPHODIESTERASE AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(PDEGAMMA)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
    1fqj: CRYSTAL STRUCTURE OF THE HETEROTRIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, THE GAMMA SUBUNIT OF PHOSPHODIESTERASE AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(PDEGAMMA)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
  • 1fqk: CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
    1fqk: CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
  • 1got: HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS
    1got: HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS
  • 1tad: GTPASE MECHANISM OF GPROTEINS FROM THE 1.7-ANGSTROM CRYSTAL STRUCTURE OF TRANSDUCIN ALPHA-GDP-ALF4-
    1tad: GTPASE MECHANISM OF GPROTEINS FROM THE 1.7-ANGSTROM CRYSTAL STRUCTURE OF TRANSDUCIN ALPHA-GDP-ALF4-
  • 1tag: STRUCTURAL DETERMINANTS FOR ACTIVATION OF THE ALPHA-SUBUNIT OF A HETEROTRIMERIC G PROTEIN
    1tag: STRUCTURAL DETERMINANTS FOR ACTIVATION OF THE ALPHA-SUBUNIT OF A HETEROTRIMERIC G PROTEIN
  • 1tnd: THE 2.2 ANGSTROMS CRYSTAL STRUCTURE OF TRANSDUCIN-ALPHA COMPLEXED WITH GTP GAMMA S
    1tnd: THE 2.2 ANGSTROMS CRYSTAL STRUCTURE OF TRANSDUCIN-ALPHA COMPLEXED WITH GTP GAMMA S
  • v
  • t
  • e
3.6.1
3.6.2
3.6.3-4: ATPase
3.6.3
Cu++ (3.6.3.4)
Ca+ (3.6.3.8)
Na+/K+ (3.6.3.9)
H+/K+ (3.6.3.10)
  • ATP4A
Other P-type ATPase
3.6.4
3.6.5: GTPase
3.6.5.1: Heterotrimeric G protein
3.6.5.2: Small GTPase > Ras superfamily
3.6.5.3: Protein-synthesizing GTPase
3.6.5.5-6: Polymerization motors


Stub icon

This article on a gene on human chromosome 3 is a stub. You can help Wikipedia by expanding it.

  • v
  • t
  • e