PHOX2B

Protein-coding gene in the species Homo sapiens
PHOX2B
Identifiers
AliasesPHOX2B, NBLST2, NBPhox, PMX2B, paired like homeobox 2b, CCHS
External IDsOMIM: 603851 MGI: 1100882 HomoloGene: 68371 GeneCards: PHOX2B
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for PHOX2B
Genomic location for PHOX2B
Band4p13Start41,744,082 bp[1]
End41,748,725 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for PHOX2B
Genomic location for PHOX2B
Band5 C3.1|5 35.95 cMStart67,251,742 bp[2]
End67,256,644 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • inferior olivary nucleus

  • rectum

  • transverse colon

  • appendix

  • small intestine

  • right adrenal gland

  • duodenum

  • muscle tissue

  • smooth muscle tissue

  • left adrenal gland
Top expressed in
  • external carotid artery

  • enteric nervous system

  • internal carotid artery

  • adrenal gland

  • facial motor nucleus

  • female urethra

  • medial vestibular nucleus

  • male urethra

  • ileum

  • carotid body
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • DNA binding
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • nucleus
  • nucleoplasm
Biological process
  • negative regulation of cell population proliferation
  • glial cell differentiation
  • respiratory system development
  • positive regulation of G2/M transition of mitotic cell cycle
  • medullary reticular formation development
  • transcription, DNA-templated
  • parasympathetic nervous system development
  • regulation of respiratory gaseous exchange by nervous system process
  • noradrenergic neuron development
  • cellular response to BMP stimulus
  • multicellular organism development
  • neural crest cell migration involved in autonomic nervous system development
  • hindbrain tangential cell migration
  • sympathetic nervous system development
  • skeletal muscle cell differentiation
  • enteric nervous system development
  • retrotrapezoid nucleus neuron differentiation
  • regulation of gene expression
  • positive regulation of neuron differentiation
  • brainstem development
  • inner ear development
  • cell development
  • regulation of transcription, DNA-templated
  • sympathetic ganglion development
  • negative regulation of neuron differentiation
  • cell differentiation in hindbrain
  • autonomic nervous system development
  • efferent axon development in a lateral line nerve
  • neuron differentiation
  • neuron migration
  • dopaminergic neuron differentiation
  • noradrenergic neuron differentiation
  • positive regulation of transcription by RNA polymerase II
  • transcription by RNA polymerase II
  • positive regulation of cold-induced thermogenesis
  • nervous system development
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8929

18935

Ensembl

ENSG00000109132

ENSMUSG00000012520

UniProt

Q99453

O35690

RefSeq (mRNA)

NM_003924

NM_008888

RefSeq (protein)

NP_003915

NP_032914

Location (UCSC)Chr 4: 41.74 – 41.75 MbChr 5: 67.25 – 67.26 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Paired-like homeobox 2b (PHOX2B), also known as neuroblastoma Phox (NBPhox), is a protein that in humans is encoded by the PHOX2B gene located on chromosome 4.[5]

It codes for a homeodomain transcription factor. It is expressed exclusively in the nervous system, in most neurons that control the viscera (cardiovascular, digestive and respiratory systems). It is also required for their differentiation.

Immunohistochemistry

Essential for the differentiation and survival of sympathetic neurons and chromaffin cells, the transcription factor PHOX2B is highly specific for the peripheral autonomic nervous system. Neuroblasts are derived from sympathoadrenal lineage neural crest cells and therefore require and constitutively express PHOX2B. PHOX2B immunohistochemical staining, as a marker of neural crest derivation, has been shown to be sensitive and specific for undifferentiated neuroblastoma, enabling identification where other markers fail to recognize neuroblastoma among various different small round blue cell tumors of childhood.[6][7][8][9]

The diagnostic utility of PHOX2B staining extends to later stages of differentiation. Its strength and specificity can detect the small foci of neuroblastic tumors metastatic to the bone marrow, an identification critical for determining disease staging. PHOX2B staining also overcomes frequent obstacles to neuroblastoma detection in post-treatment samples, which frequently exhibit dense fibrosis, prominent inflammatory infiltrates, and/or diffuse calcification.[10]

Pathology

Mutations in human PHOX2B cause a rare disease of the visceral nervous system (dysautonomia): congenital central hypoventilation syndrome (associated with respiratory arrests during sleep and, occasionally, wakefulness), Hirschsprung's disease (partial agenesis of the enteric nervous system), ROHHAD, and tumours of the sympathetic ganglia. In most people, Exon 3 of the gene contains a sequence of 20 polyalanine repeats. An increase in the number of repeats is associated with congenital central hypoventilation syndrome. There may also be other pathogenic mutations further along the gene.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000109132 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000012520 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: paired-like homeobox 2b".
  6. ^ Bielle, Franck; Fréneaux, Paul; Jeanne-Pasquier, Corinne; Maran-Gonzalez, Aurélie; Rousseau, Audrey; Lamant, Laurence; Paris, Régine; Pierron, Gaëlle; Nicolas, André Victor; Sastre-Garau, Xavier; Delattre, Olivier; Bourdeaut, Franck; Peuchmaur, Michel (2012). "PHOX2B Immunolabeling". The American Journal of Surgical Pathology. 36 (8): 1141–1149. doi:10.1097/PAS.0b013e31825a6895. PMID 22790854. S2CID 25924210.
  7. ^ Hata, Jessica L.; Correa, Hernan; Krishnan, Chandra; Esbenshade, Adam J.; Black, Jennifer O.; Chung, Dai H.; Mobley, Bret C. (2015). "Diagnostic Utility of PHOX2B in Primary and Treated Neuroblastoma and in Neuroblastoma Metastatic to the Bone Marrow". Archives of Pathology & Laboratory Medicine. 139 (4): 543–546. doi:10.5858/arpa.2014-0255-OA. PMID 25822764.
  8. ^ Hung, Yin P.; Lee, John P.; Bellizzi, Andrew M.; Hornick, Jason L. (2017). "PHOX2B reliably distinguishes neuroblastoma among small round blue cell tumours". Histopathology. 71 (5): 786–794. doi:10.1111/his.13288. PMID 28640941. S2CID 19123236.
  9. ^ Warren, Mikako; Matsuno, Ryosuke; Tran, Henry; Shimada, Hiroyuki (2018). "Utility of Phox2b immunohistochemical stain in neural crest tumours and non-neural crest tumours in paediatric patients". Histopathology. 72 (4): 685–696. doi:10.1111/his.13412. PMID 28986989. S2CID 3302863.
  10. ^ Hata et al. (2015).

Further reading

  • Glas J, Seiderer J, Pasciuto G, et al. (2009). "rs224136 on chromosome 10q21.1 and variants in PHOX2B, NCF4, and FAM92B are not major genetic risk factors for susceptibility to Crohn's disease in the German population". Am. J. Gastroenterol. 104 (3): 665–72. doi:10.1038/ajg.2008.65. PMID 19262523. S2CID 7144509.
  • Gaultier C, Trang H, Dauger S, Gallego J (2005). "Pediatric disorders with autonomic dysfunction: what role for PHOX2B?". Pediatr. Res. 58 (1): 1–6. doi:10.1203/01.PDR.0000166755.29277.C4. PMID 15901893.
  • Liu CP, Li XG, Lou JT, et al. (2009). "Association analysis of the PHOX2B gene with Hirschsprung disease in the Han Chinese population of Southeastern China". J. Pediatr. Surg. 44 (9): 1805–11. doi:10.1016/j.jpedsurg.2008.12.009. PMID 19735829.
  • Repetto GM, Corrales RJ, Abara SG, et al. (2009). "Later-onset congenital central hypoventilation syndrome due to a heterozygous 24-polyalanine repeat expansion mutation in the PHOX2B gene". Acta Paediatr. 98 (1): 192–5. doi:10.1111/j.1651-2227.2008.01039.x. PMID 18798833. S2CID 4979994.
  • Fan Y, Huang J, Kieran N, Zhu MY (2009). "Effects of transcription factors Phox2 on expression of norepinephrine transporter and dopamine beta-hydroxylase in SK-N-BE(2)C cells". J. Neurochem. 110 (5): 1502–13. doi:10.1111/j.1471-4159.2009.06260.x. PMC 9339151. PMID 19573018.
  • McGaughey DM, Stine ZE, Huynh JL, et al. (2009). "Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend". BMC Genomics. 10: 8. doi:10.1186/1471-2164-10-8. PMC 2630312. PMID 19128492.
  • Jennings LJ, Yu M, Zhou L, et al. (2010). "Comparison of PHOX2B testing methods in the diagnosis of congenital central hypoventilation syndrome and mosaic carriers". Diagn. Mol. Pathol. 19 (4): 224–31. doi:10.1097/PDM.0b013e3181eb92ff. PMID 21051998. S2CID 10071866.
  • Tu E, Bagnall RD, Duflou J, et al. (2010). "Post-mortem pathologic and genetic studies in "dead in bed syndrome" cases in type 1 diabetes mellitus". Hum. Pathol. 41 (3): 392–400. doi:10.1016/j.humpath.2009.08.020. PMID 20004937.
  • Janoueix-Lerosey I, Schleiermacher G, Delattre O (2010). "Molecular pathogenesis of peripheral neuroblastic tumors". Oncogene. 29 (11): 1566–79. doi:10.1038/onc.2009.518. PMID 20101209.
  • Longo L, Borghini S, Schena F, et al. (2008). "PHOX2A and PHOX2B genes are highly co-expressed in human neuroblastoma". Int. J. Oncol. 33 (5): 985–91. doi:10.3892/ijo_00000086. PMID 18949361.
  • Hammel M, Klein M, Trips T, et al. (2009). "Congenital Central Hypoventilation Syndrome due to PHOX2b gene defects: inheritance from asymptomatic parents". Klin Padiatr. 221 (5): 286–9. doi:10.1055/s-0029-1220941. PMID 19707990. S2CID 206295649.
  • Arai H, Otagiri T, Sasaki A, et al. (2010). "Polyalanine expansion of PHOX2B in congenital central hypoventilation syndrome: rs17884724:A>C is associated with 7-alanine expansion". J. Hum. Genet. 55 (1): 4–7. doi:10.1038/jhg.2009.109. PMID 19881470.
  • Lee P, Su YN, Yu CJ, et al. (2009). "PHOX2B mutation-confirmed congenital central hypoventilation syndrome in a Chinese family: presentation from newborn to adulthood". Chest. 135 (2): 537–44. doi:10.1378/chest.08-1664. PMID 19201717.
  • Wu HT, Su YN, Hung CC, et al. (2009). "Interaction between PHOX2B and CREBBP mediates synergistic activation: mechanistic implications of PHOX2B mutants". Hum. Mutat. 30 (4): 655–60. doi:10.1002/humu.20929. PMID 19191321. S2CID 22257861.
  • Trochet D, Mathieu Y, Pontual L, et al. (2009). "In Vitro studies of non poly alanine PHOX2B mutations argue against a loss-of-function mechanism for congenital central hypoventilation". Hum. Mutat. 30 (2): E421-31. doi:10.1002/humu.20923. PMID 19058226. S2CID 10167662.
  • Dubreuil V, Thoby-Brisson M, Rallu M, et al. (2009). "Defective respiratory rhythmogenesis and loss of central chemosensitivity in Phox2b mutants targeting retrotrapezoid nucleus neurons". J. Neurosci. 29 (47): 14836–46. doi:10.1523/JNEUROSCI.2623-09.2009. PMC 6665996. PMID 19940179.
  • Serra A, Häberle B, König IR, et al. (2008). "Rare occurrence of PHOX2b mutations in sporadic neuroblastomas". J. Pediatr. Hematol. Oncol. 30 (10): 728–32. doi:10.1097/MPH.0b013e3181772141. PMID 19011468. S2CID 32426671.
  • Rudzinski E, Kapur RP (2010). "PHOX2B immunolocalization of the candidate human retrotrapezoid nucleus". Pediatr. Dev. Pathol. 13 (4): 291–9. doi:10.2350/09-07-0682-OA.1. PMID 19888871. S2CID 34088649.
  • Larkin EK, Patel SR, Goodloe RJ, et al. (2010). "A candidate gene study of obstructive sleep apnea in European Americans and African Americans". Am. J. Respir. Crit. Care Med. 182 (7): 947–53. doi:10.1164/rccm.201002-0192OC. PMC 2970865. PMID 20538960.
  • Lee JJ, Essers JB, Kugathasan S, et al. (2010). "Association of linear growth impairment in pediatric Crohn's disease and a known height locus: a pilot study". Ann. Hum. Genet. 74 (6): 489–97. doi:10.1111/j.1469-1809.2010.00606.x. PMC 2955808. PMID 20846217.

External links

  • GeneReviews/NCBI/NIH/UW entry on Congenital Central Hypoventilation Syndrome
  • Phox2b+protein at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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