SLC35C2

Protein-coding gene in the species Homo sapiens
SLC35C2
Identifiers
AliasesSLC35C2, BA394O2.1, C20orf5, CGI-15, OVCOV1, solute carrier family 35 member C2
External IDsMGI: 2385166 HomoloGene: 6581 GeneCards: SLC35C2
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for SLC35C2
Genomic location for SLC35C2
Band20q13.12Start46,345,980 bp[1]
End46,364,458 bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for SLC35C2
Genomic location for SLC35C2
Band2 H3|2 85.53 cMStart165,118,474 bp[2]
End165,129,789 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right uterine tube

  • left lobe of thyroid gland

  • right lobe of thyroid gland

  • stromal cell of endometrium

  • minor salivary gland

  • canal of the cervix

  • body of stomach

  • skin of abdomen

  • body of pancreas

  • right lobe of liver
Top expressed in
  • lacrimal gland

  • duodenum

  • yolk sac

  • jejunum

  • superior frontal gyrus

  • proximal tubule

  • spermatocyte

  • lip

  • salivary gland

  • cerebellar cortex
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • antiporter activity
  • transmembrane transporter activity
Cellular component
  • integral component of membrane
  • cis-Golgi network
  • endoplasmic reticulum-Golgi intermediate compartment membrane
  • membrane
  • endoplasmic reticulum-Golgi intermediate compartment
  • nucleoplasm
  • Golgi apparatus
Biological process
  • protein O-linked fucosylation
  • fucosylation
  • negative regulation of gene expression
  • positive regulation of Notch signaling pathway
  • UDP-glucose transmembrane transport
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51006

228875

Ensembl

ENSG00000080189

ENSMUSG00000017664

UniProt

Q9NQQ7

Q8VCX2

RefSeq (mRNA)
NM_001281457
NM_001281458
NM_001281459
NM_001281460
NM_015945

NM_173073
NM_173179

NM_001252573
NM_001252574
NM_001252575
NM_144893
NM_001363015

NM_001363016

RefSeq (protein)
NP_001268386
NP_001268387
NP_001268388
NP_001268389
NP_057029

NP_775096
NP_775271

NP_001239502
NP_001239503
NP_001239504
NP_659142
NP_001349944

NP_001349945

Location (UCSC)Chr 20: 46.35 – 46.36 MbChr 2: 165.12 – 165.13 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Solute carrier family 35 member C2 is a protein that in humans is encoded by the SLC35C2 gene.[5][6][7]

Oxygenation levels play an important role in the regulation of cellular invasiveness which occurs during early implantation when the trophoblast cells invade the uterus as well as during tumour progression and metastasis. This gene, which is regulated by oxygen tension, is induced in hypoxic trophoblast cells and is overexpressed in ovarian cancer. Two protein isoforms are encoded by transcript variants of this gene.[7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000080189 - Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000017664 - Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (Aug 2000). "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics". Genome Res. 10 (5): 703–13. doi:10.1101/gr.10.5.703. PMC 310876. PMID 10810093.
  6. ^ Fossey SC, Mychaleckyj JC, Pendleton JK, Snyder JR, Bensen JT, Hirakawa S, Rich SS, Freedman BI, Bowden DW (Sep 2001). "A high-resolution 6.0-megabase transcript map of the type 2 diabetes susceptibility region on human chromosome 20". Genomics. 76 (1–3): 45–57. doi:10.1006/geno.2001.6584. PMID 11549316.
  7. ^ a b "Entrez Gene: SLC35C2 solute carrier family 35, member C2".

Further reading

  • Lash GE, Postovit LM, Matthews NE, et al. (2002). "Oxygen as a regulator of cellular phenotypes in pregnancy and cancer". Can. J. Physiol. Pharmacol. 80 (2): 103–9. doi:10.1139/y02-008. PMID 11934252.
  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Pires Martins R, Leach RE, Krawetz SA (2001). "Whole-body gene expression by data mining". Genomics. 72 (1): 34–42. doi:10.1006/geno.2000.6437. PMID 11247664.
  • Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi:10.1038/414865a. PMID 11780052.
  • Leach R, Duniec-Dmuchowski Z, Tanaka T, et al. (2002). "Assignment of OVCOV1 (alias CGI-15) to human chromosome 20 band q13.1→q13.2 by fluorescent in situ hybridization". Cytogenet. Cell Genet. 94 (3–4): 252–3. doi:10.1159/000048828. PMID 11856893. S2CID 33594704.
  • Leach RE, Duniec-Dmuchowski ZM, Pesole G, et al. (2003). "Identification, molecular characterization, and tissue expression of OVCOV1". Mamm. Genome. 13 (11): 619–24. doi:10.1007/s00335-002-2185-4. PMID 12461647. S2CID 19423578.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.


  • v
  • t
  • e