SOX8

Protein-coding gene in the species Homo sapiens
SOX8
Identifiers
AliasesSOX8, SRY-box 8, SRY-box transcription factor 8
External IDsOMIM: 605923 MGI: 98370 HomoloGene: 7950 GeneCards: SOX8
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for SOX8
Genomic location for SOX8
Band16p13.3Start981,770 bp[1]
End986,979 bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for SOX8
Genomic location for SOX8
Band17 A3.3|17 12.69 cMStart25,784,866 bp[2]
End25,789,660 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • inferior ganglion of vagus nerve

  • external globus pallidus

  • subthalamic nucleus

  • parotid gland

  • ventral tegmental area

  • medulla oblongata

  • spinal cord

  • superior vestibular nucleus

  • putamen

  • postcentral gyrus
Top expressed in
  • metatarsal bones

  • Bowman's capsule

  • visual cortex

  • secondary oocyte

  • superior frontal gyrus

  • footplate

  • urethra

  • male urethra

  • Sertoli cell

  • anterior horn of spinal cord
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • DNA binding
  • sequence-specific DNA binding
  • DNA-binding transcription factor activity
  • transcription factor binding
  • protein heterodimerization activity
  • RNA polymerase II core promoter sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • DNA-binding transcription activator activity, RNA polymerase II-specific
Cellular component
  • cytoplasm
  • nucleus
Biological process
  • positive regulation of osteoblast proliferation
  • cell fate commitment
  • negative regulation of myoblast differentiation
  • positive regulation of branching involved in ureteric bud morphogenesis
  • male gonad development
  • peripheral nervous system development
  • regulation of transcription, DNA-templated
  • morphogenesis of a branching epithelium
  • ureter morphogenesis
  • regulation of hormone levels
  • oligodendrocyte differentiation
  • negative regulation of apoptotic process
  • in utero embryonic development
  • cell maturation
  • Sertoli cell development
  • transcription, DNA-templated
  • metanephric nephron tubule formation
  • positive regulation of transcription, DNA-templated
  • negative regulation of photoreceptor cell differentiation
  • enteric nervous system development
  • renal vesicle induction
  • positive regulation of kidney development
  • positive regulation of gene expression
  • retina development in camera-type eye
  • astrocyte fate commitment
  • osteoblast differentiation
  • neural crest cell migration
  • spermatogenesis
  • retinal rod cell differentiation
  • skeletal muscle cell differentiation
  • adipose tissue development
  • negative regulation of transcription, DNA-templated
  • fat cell differentiation
  • signal transduction
  • positive regulation of transcription by RNA polymerase II
  • positive regulation of gliogenesis
  • morphogenesis of an epithelium
  • central nervous system development
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

30812

20681

Ensembl

ENSG00000005513

ENSMUSG00000024176

UniProt

P57073

Q04886

RefSeq (mRNA)

NM_014587

NM_011447

RefSeq (protein)

NP_055402

NP_035577

Location (UCSC)Chr 16: 0.98 – 0.99 MbChr 17: 25.78 – 25.79 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor SOX-8 is a protein that in humans is encoded by the SOX8 gene.[5][6][7]

This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after forming a protein complex with other proteins. This protein may be involved in brain development and function. Haploinsufficiency for this protein may contribute to the mental retardation found in haemoglobin H-related mental retardation (ATR-16 syndrome).[7]

See also

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000005513 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000024176 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Pfeifer D, Poulat F, Holinski-Feder E, Kooy F, Scherer G (Apr 2000). "The SOX8 gene is located within 700 kb of the tip of chromosome 16p and is deleted in a patient with ATR-16 syndrome". Genomics. 63 (1): 108–16. doi:10.1006/geno.1999.6060. PMID 10662550.
  6. ^ Schepers GE, Bullejos M, Hosking BM, Koopman P (Apr 2000). "Cloning and characterisation of the Sry-related transcription factor gene Sox8". Nucleic Acids Res. 28 (6): 1473–80. doi:10.1093/nar/28.6.1473. PMC 111037. PMID 10684944.
  7. ^ a b "Entrez Gene: SOX8 SRY (sex determining region Y)-box 8".

Further reading

  • Daniels RJ, Peden JF, Lloyd C, et al. (2001). "Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16". Hum. Mol. Genet. 10 (4): 339–52. doi:10.1093/hmg/10.4.339. PMID 11157797.
  • Cheng YC, Lee CJ, Badge RM, et al. (2001). "Sox8 gene expression identifies immature glial cells in developing cerebellum and cerebellar tumours". Brain Res. Mol. Brain Res. 92 (1–2): 193–200. doi:10.1016/S0169-328X(01)00147-4. PMID 11483257.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Gevaert K, Goethals M, Martens L, et al. (2004). "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides". Nat. Biotechnol. 21 (5): 566–9. doi:10.1038/nbt810. PMID 12665801. S2CID 23783563.
  • Schepers G, Wilson M, Wilhelm D, Koopman P (2003). "SOX8 is expressed during testis differentiation in mice and synergizes with SF1 to activate the Amh promoter in vitro". J. Biol. Chem. 278 (30): 28101–8. doi:10.1074/jbc.M304067200. PMID 12732652.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Martin J, Han C, Gordon LA, et al. (2005). "The sequence and analysis of duplication-rich human chromosome 16" (PDF). Nature. 432 (7020): 988–94. Bibcode:2004Natur.432..988M. doi:10.1038/nature03187. PMID 15616553. S2CID 4362044.
  • Wissmüller S, Kosian T, Wolf M, et al. (2006). "The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors". Nucleic Acids Res. 34 (6): 1735–44. doi:10.1093/nar/gkl105. PMC 1421504. PMID 16582099.
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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