ZNF644

Protein-coding gene in the species Homo sapiens
ZNF644
Identifiers
AliasesZNF644, BM-005, MYP21, NatF, ZEP-2, zinc finger protein 644
External IDsOMIM: 614159 MGI: 1277212 HomoloGene: 12971 GeneCards: ZNF644
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for ZNF644
Genomic location for ZNF644
Band1p22.2Start90,915,298 bp[1]
End91,022,272 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for ZNF644
Genomic location for ZNF644
Band5 E5|5 51.43 cMStart106,616,739 bp[2]
End106,697,287 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • ganglionic eminence

  • tibialis anterior muscle

  • corpus callosum

  • bone marrow cells

  • pancreatic epithelial cell

  • deltoid muscle

  • endothelial cell

  • sural nerve

  • lactiferous duct
Top expressed in
  • spermatocyte

  • spermatid

  • medial ganglionic eminence

  • extensor digitorum longus muscle

  • maxillary prominence

  • cingulate gyrus

  • atrium

  • cerebellar vermis

  • olfactory epithelium

  • molar
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • DNA binding
  • metal ion binding
  • nucleic acid binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • DNA-binding transcription factor activity
Cellular component
  • nucleus
Biological process
  • regulation of transcription, DNA-templated
  • transcription, DNA-templated
  • regulation of transcription by RNA polymerase II
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

84146

52397

Ensembl

ENSG00000122482

ENSMUSG00000049606

UniProt

Q9H582

n/a

RefSeq (mRNA)

NM_016620
NM_032186
NM_201269

NM_026856
NM_001363318
NM_001363319
NM_001363320
NM_001363321

NM_001363322
NM_001363323

RefSeq (protein)

NP_057704
NP_115562
NP_958357

n/a

Location (UCSC)Chr 1: 90.92 – 91.02 MbChr 5: 106.62 – 106.7 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zing finger protein 644 (ZNF644) also known as zinc finger motif enhancer-binding protein 2 (Zep-2) is a protein that in humans is encoded by the ZNF644 gene.[5]

Clinical relevance

Mutations in the ZNF644 gene have been found in sporadic cases of high myopia.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000122482 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000049606 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: zinc finger protein 644".
  6. ^ Shi, Yi (2011). "Exome Sequencing Identifies ZNF644 Mutations in High Myopia". PLOS Genetics. 7 (6): e1002084. doi:10.1371/journal.pgen.1002084. PMC 3111487. PMID 21695231. Open access icon

Further reading

  • Zabaneh D, Balding DJ (2010). "A genome-wide association study of the metabolic syndrome in Indian Asian men". PLOS ONE. 5 (8): e11961. Bibcode:2010PLoSO...511961Z. doi:10.1371/journal.pone.0011961. PMC 2915922. PMID 20694148. Open access icon
  • Mulligan P, Westbrook TF, Ottinger M, et al. (2008). "CDYL bridges REST and histone methyltransferases for gene repression and suppression of cellular transformation". Mol. Cell. 32 (5): 718–26. doi:10.1016/j.molcel.2008.10.025. PMC 6595072. PMID 19061646.
  • Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
  • Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315–21. Bibcode:2006Natur.441..315G. doi:10.1038/nature04727. PMID 16710414.
  • Zhang QH, Ye M, Wu XY, et al. (2000). "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells". Genome Res. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC 310934. PMID 11042152.
  • v
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  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies