Transkripcioni faktori i intracelularni receptori
(1) Osnovni domeni |
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(1.1) Osnovni leucinski zatvarač (bZIP) | Aktivirajući transkripcioni faktor (AATF, 1, 2, 3, 4, 5, 6, 7) • AP-1 (c-Fos, FOSB, FOSL1, FOSL2, c-Jun, JUNB, JUND) • BACH (1, 2) • BATF • BLZF1 • C/EBP (α, β, γ, δ, ε, ζ) • CREB (1, 3, L1) • CREM • DBP • DDIT3 • GABPA • HLF • MAF (B, F, G, K) • NFE (2, L1, L2) • NFIL3 • NRL • NRF1 • XBP1 |
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(1.2) Osnovni heliks-petlja-heliks (bHLH) | ATOH1 • AhR • AHRR • ARNT • ASCL1 • BHLHB2 • BMAL (ARNTL, ARNTL2) • CLOCK • EPAS1 • HAND (1, 2) • HES (5, 6) • HEY (1, 2, L) • HES1 • HIF (1A, 3A) • ID (1, 2, 3, 4) • LYL1 • MXD4 • MYCL1 • MYCN • Myogenic regulatorni faktori (MyoD, Myogenin, MYF5, MYF6) • Neurogenini (1, 2, 3) • NeuroD (1, 2) • NPAS (1, 2, 3) • OLIG (1, 2) • Pho4 • Scleraxis • TAL (1, 2) • Twist • USF1 |
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(1.3) bHLH-ZIP | AP-4 • MAX • MITF • MNT • MLX • MXI1 • Myc • SREBP (1, 2) |
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(1.4) NF-1 | NFI (A, B, C, X) • SMAD (R-SMAD (1, 2, 3, 5, 9) - I-SMAD (6, 7) - 4) |
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(1.5) RF-X | RFX (1, 2, 3, 4, 5, ANK) |
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(1.6) Osnovni heliks-razmak-heliks (bHSH) | AP-2 (α, β, γ, δ, ε) |
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(2) DNA-vezujući domeni cinkovog prsta |
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(2.1) Nuklearni receptor (Cys4) | potfamilija 1 (Tiroidni hormon (α, β), CAR, FXR, LXR (α, β), PPAR (α, β/δ, γ), PXR, RAR ( α, β, γ), ROR ( α, β, γ), Rev-ErbA (α, β), VDR) potfamilija 2 (COUP-TF (I, II), Ear-2, HNF4 (α, γ), PNR, RXR (α, β, γ), Testikularni receptor (2, 4), TLX) potfamilija 3 (Steroidni hormon (Androgen, Estrogen (α, β), Glukokortikoid, Mineralokortikoid, Progesteron), Estrogen-vezani (α, β, γ)) potfamilija 4 NUR (NGFIB, NOR1, NURR1) • potfamilija 5 (LRH-1, SF1) • potfamilija 6 (GCNF) • potfamilija 0 (DAX1, SHP) |
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(2.2) Drugi Cys4 | GATA (1, 2, 3, 4, 5, 6) • MTA (1, 2, 3) • TRPS1 |
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(2.3) Cys2His2 | Generalni transkripcioni faktori (TFIIA, TFIIB, TFIID, TFIIE, TFIIF (1, 2), TFIIH (1, 2, 4, 2I, 3A, 3C1, 3C2)) ATBF1 • BCL (6, 11A, 11B) • CTCF • E4F1 • EGR (2, 3) • ERV3 • GFI1 • GLI-Kruppel familija (1, 2, 3, REST, S2, YY1) • HIC (1, 2) • HIVEP (1, 2, 3) • IKZF (1, 2, 3) • ILF (2, 3) • KLF (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 17) • MTF1 • MYT1 • OSR1 • SP (1, 2, 4, 7) • WT1 • Zbtb7 (7A, 7B) • ZBTB (16, 17, 20, 32, 33, 40) • cink prst (3, 7, 9, 10, 19, 22, 24, 33B, 34, 35, 41, 43, 44, 51, 74, 143, 146, 148, 165, 202, 217, 219, 238, 239, 259, 267, 268, 281, 295, 318, 330, 346, 350, 365, 366, 384, 423, 451, 452, 471, 593, 638, 649, 655) |
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(2.4) Cys6 | HIVEP1 |
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(2.5) Naizmenična kompozicija | AIRE • DIDO1 • GRLF1 • ING (1, 2, 4) • JARID (1A, 1B, 1C, 1D, 2) • JMJD1B |
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(3.1) Homeodomen | ARX • CDX (1, 2) • CRX • CUTL1 • DBX (1, 2) • DLX (3, 4, 5) • EMX2 • EN (1, 2) • FHL (1, 2, 3) • HESX1 • HHEX • HLX • Homeobox (A1, A2, A3, A4, A5, A7, A9, A10, A11, A13, B1, B2, B3, B4, B5, B6, B7, B8, B9, B13, C4, C5, C6, C8, C9, C10, C11, C13, D1, D3, D4, D8, D9, D10, D11, D12, D13) • HOPX • IRX (1, 2, 3, 4, 5, 6, MKX) • LMX (1A, 1B) • MEIS (1, 2) • MEOX2 • MNX1 • MSX (1, 2) • NANOG • NKX (2-1, 2-2, 2-3, 2-5, 3-1, 3-2, 6-1, 6-2) • PBX (1, 2, 3) • PHF (1, 3, 6, 8, 10, 16, 17, 20, 21A) • PITX (1, 2, 3) • POU domen (PIT-1, BRN-3: A, B, C, Oktamer transkripcioni faktor: 1, 2, 3/4, 6, 7, 11) • OTX (1, 2) • PDX1 • ZEB (1, 2) |
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(3.2) Paired box | PAX (1, 2, 3, 4, 5, 6, 7, 8, 9) |
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(3.3) Fork glava / winged heliks | E2F (1, 2, 3, 4, 5) • FOX proteini (C1, C2, D3, E1, G1, H1, K2, L2, M1, N3, O1, O3, O4, P1, P2, P3) |
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(3.4) Faktori toplotnog šoka | HSF (1, 2, 4) |
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(3.5) Triptofan klasteri | ELF (2, 4, 5) • EGF • ELK (1, 3, 4) • ERF • ERG • ETS (1, 2, SPIB) • ETV (1, 4, 5, 6) • FLI1 • Interferon regulatorni faktori (1, 2, 3, 4, 5, 6, 7, 8) • MYB • MYBL2 |
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(3.6) TEA domen | transkripcioni pojačivač faktor (1, 2, 3, 4) |
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(4) β-Scaffold faktori sa manjim žljebnim kontaktima |
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(4.1) Rel homologni region | NF-κB (NFKB1, NFKB2, REL, RELA, RELB) • NFAT (C1, C2, C3, C4, 5) |
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(4.2) STAT | STAT (1, 2, 3, 4, 5, 6) |
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(4.3) p53 | p53 • TBX (1, 2, 3, 5, 19, 21, 22, Brahiuri, TBR1) |
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(4.4) MADS kutija | Mef2 (A, B, C, D) • SRF |
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(4.6) TATA vezujući proteini | TBP • TBPL1 |
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(4.7) Grupa visoke pokretljivosti | HMGB (1, 2, 3) • HNF (1A, 1B) • LEF1 • SOX (1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 18, 21) • SRY • SSRP1 • TCF (3, 4) • TOX (1, 2, 3, 4) |
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(4.10) Domen hladnog šoka | CSDA, YBX1 |
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(4.11) Runt | CBF (CBFA2T2, CBFA2T3, RUNX1, RUNX2, RUNX3, RUNX1T1) |
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(0) Drugi transkripcioni faktori |
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(0.2) HMGI(Y) | HMGA (1, 2) • HBP1 |
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(0.3) Džep domen | Rb • RBL1 • RBL2 |
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(0.5) AP-2/EREBP-vezani faktori | Apetala 2 • EREBP • B3 |
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(0.6) Razno | ARID (1A, 1B, 2, 3A, 3B, 4A) • CAP • IFI (16, 35) • MLL (2, 3, T1) • MNDA • NFY (A, B, C) • Ro/Sigma |
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vidi isto transkripcioni faktor/koregulator nedostataka B bsyn: dnk (repl, cycl, reco, repr) · tscr (fact, tcrg, nucl, rnat, rept, ptts) · tltn (risu, pttl, nexn) · dnab, rnab/runp · stru (domn, 1°, 2°, 3°, 4°) |