Cav1.4

Protein-coding gene in humans
CACNA1F
Identifiers
AliasesCACNA1F, AIED, COD3, COD4, CORDX, CORDX3, CSNB2, CSNB2A, CSNBX2, Cav1.4, Cav1.4alpha1, JM8, JMC8, OA2, calcium voltage-gated channel subunit alpha1 F
External IDsOMIM: 300110 MGI: 1859639 HomoloGene: 74542 GeneCards: CACNA1F
Gene location (Human)
X chromosome (human)
Chr.X chromosome (human)[1]
X chromosome (human)
Genomic location for CACNA1F
Genomic location for CACNA1F
BandXp11.23Start49,205,063 bp[1]
End49,233,371 bp[1]
Gene location (Mouse)
X chromosome (mouse)
Chr.X chromosome (mouse)[2]
X chromosome (mouse)
Genomic location for CACNA1F
Genomic location for CACNA1F
BandX A1.1|X 3.42 cMStart7,473,322 bp[2]
End7,501,435 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right uterine tube

  • right lung

  • prefrontal cortex

  • Brodmann area 9

  • lymph node

  • spleen

  • upper lobe of left lung

  • rectum

  • gallbladder

  • appendix
Top expressed in
  • retinal pigment epithelium

  • skin of abdomen

  • pineal gland

  • olfactory bulb

  • trachea

  • major salivary gland

  • submandibular gland
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • calcium channel activity
  • metal ion binding
  • voltage-gated ion channel activity
  • ion channel activity
  • voltage-gated calcium channel activity
  • protein binding
  • high voltage-gated calcium channel activity
Cellular component
  • membrane
  • plasma membrane
  • neuronal cell body
  • integral component of membrane
  • perikaryon
  • photoreceptor outer segment
  • voltage-gated calcium channel complex
Biological process
  • membrane depolarization during action potential
  • response to stimulus
  • regulation of T cell receptor signaling pathway
  • regulation of ion transmembrane transport
  • ion transport
  • detection of light stimulus involved in visual perception
  • T cell homeostasis
  • calcium ion transmembrane transport
  • transmembrane transport
  • calcium ion transport
  • visual perception
  • negative regulation of voltage-gated calcium channel activity
  • calcium ion import
  • cardiac conduction
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

778

54652

Ensembl

ENSG00000102001

ENSMUSG00000031142

UniProt

O60840

Q9JIS7

RefSeq (mRNA)

NM_001256789
NM_001256790
NM_005183

NM_019582

RefSeq (protein)

NP_001243718
NP_001243719
NP_005174

n/a

Location (UCSC)Chr X: 49.21 – 49.23 MbChr X: 7.47 – 7.5 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Cav1.4 also known as the calcium channel, voltage-dependent, L type, alpha 1F subunit (CACNA1F), is a human gene.[5]

This gene encodes a member of the alpha-1 subunit family; a protein in the voltage-dependent calcium channel complex. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization and consist of a complex of alpha-1, alpha-2/delta, beta, and gamma subunits in a 1:1:1:1 ratio. The alpha-1 subunit has 24 transmembrane segments and forms the pore through which ions pass into the cell. There are multiple isoforms of each of the proteins in the complex, either encoded by different genes or the result of alternative splicing of transcripts. Alternate transcriptional splice variants of the gene described here have been observed but have not been thoroughly characterized. Mutations in this gene have been shown to cause incomplete X-linked congenital stationary night blindness type 2 (CSNB2).[5]

See also

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000102001 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000031142 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b "Entrez Gene: CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit".

Further reading

  • Catterall WA, Perez-Reyes E, Snutch TP, Striessnig J (2006). "International Union of Pharmacology. XLVIII. Nomenclature and structure-function relationships of voltage-gated calcium channels". Pharmacol. Rev. 57 (4): 411–25. doi:10.1124/pr.57.4.5. PMID 16382099. S2CID 10386627.
  • Koenekoop RK, Lopez I, den Hollander AI, et al. (2007). "Genetic testing for retinal dystrophies and dysfunctions: benefits, dilemmas and solutions". Clin. Experiment. Ophthalmol. 35 (5): 473–85. doi:10.1111/j.1442-9071.2007.01534.x. PMID 17651254. S2CID 37487873.
  • Tremblay F, Laroche RG, De Becker I (1995). "The electroretinographic diagnosis of the incomplete form of congenital stationary night blindness". Vision Res. 35 (16): 2383–93. doi:10.1016/0042-6989(95)00006-L. PMID 7571473.
  • Bergen AA, ten Brink JB, Riemslag F, et al. (1995). "Localization of a novel X-linked congenital stationary night blindness locus: close linkage to the RP3 type retinitis pigmentosa gene region". Hum. Mol. Genet. 4 (5): 931–5. doi:10.1093/hmg/4.5.931. PMID 7633454.
  • Hillier LD, Lennon G, Becker M, et al. (1997). "Generation and analysis of 280,000 human expressed sequence tags". Genome Res. 6 (9): 807–28. doi:10.1101/gr.6.9.807. PMID 8889549.
  • Bergen AA, ten Brink JB, Riemslag F, et al. (1997). "Conclusive evidence for a distinct congenital stationary night blindness locus in Xp21.1". J. Med. Genet. 33 (10): 869–72. doi:10.1136/jmg.33.10.869. PMC 1050769. PMID 8933343.
  • Fisher SE, Ciccodicola A, Tanaka K, et al. (1998). "Sequence-based exon prediction around the synaptophysin locus reveals a gene-rich area containing novel genes in human proximal Xp". Genomics. 45 (2): 340–7. doi:10.1006/geno.1997.4941. hdl:11858/00-001M-0000-0012-CBE6-7. PMID 9344658.
  • Strom TM, Nyakatura G, Apfelstedt-Sylla E, et al. (1998). "An L-type calcium-channel gene mutated in incomplete X-linked congenital stationary night blindness". Nat. Genet. 19 (3): 260–3. doi:10.1038/940. PMID 9662399. S2CID 34467174.
  • Bech-Hansen NT, Naylor MJ, Maybaum TA, et al. (1998). "Loss-of-function mutations in a calcium-channel alpha1-subunit gene in Xp11.23 cause incomplete X-linked congenital stationary night blindness". Nat. Genet. 19 (3): 264–7. doi:10.1038/947. PMID 9662400. S2CID 42480901.
  • Naylor MJ, Rancourt DE, Bech-Hansen NT (2000). "Isolation and characterization of a calcium channel gene, Cacna1f, the murine orthologue of the gene for incomplete X-linked congenital stationary night blindness". Genomics. 66 (3): 324–7. doi:10.1006/geno.2000.6204. PMID 10873387.
  • Boycott KM, Pearce WG, Bech-Hansen NT (2000). "Clinical variability among patients with incomplete X-linked congenital stationary night blindness and a founder mutation in CACNA1F". Can. J. Ophthalmol. 35 (4): 204–13. doi:10.1016/s0008-4182(00)80031-9. PMID 10900517.
  • Boycott KM, Maybaum TA, Naylor MJ, et al. (2001). "A summary of 20 CACNA1F mutations identified in 36 families with incomplete X-linked congenital stationary night blindness, and characterization of splice variants". Hum. Genet. 108 (2): 91–7. doi:10.1007/s004390100461. PMID 11281458. S2CID 2844173.
  • Wutz K, Sauer C, Zrenner E, et al. (2003). "Thirty distinct CACNA1F mutations in 33 families with incomplete type of XLCSNB and Cacna1f expression profiling in mouse retina". Eur. J. Hum. Genet. 10 (8): 449–56. doi:10.1038/sj.ejhg.5200828. PMID 12111638.
  • Weleber RG (2002). "Infantile and childhood retinal blindness: a molecular perspective (The Franceschetti Lecture)". Ophthalmic Genet. 23 (2): 71–97. doi:10.1076/opge.23.2.71.2214. PMID 12187427. S2CID 30741530.
  • Zito I, Allen LE, Patel RJ, et al. (2003). "Mutations in the CACNA1F and NYX genes in British CSNBX families". Hum. Mutat. 21 (2): 169. doi:10.1002/humu.9106. PMID 12552565. S2CID 13143864.
  • Jacobi FK, Hamel CP, Arnaud B, et al. (2003). "A novel CACNA1F mutation in a french family with the incomplete type of X-linked congenital stationary night blindness". Am. J. Ophthalmol. 135 (5): 733–6. doi:10.1016/S0002-9394(02)02109-8. PMID 12719097.
  • Jalkanen R, Demirci FY, Tyynismaa H, et al. (2003). "A new genetic locus for X linked progressive cone-rod dystrophy". J. Med. Genet. 40 (6): 418–23. doi:10.1136/jmg.40.6.418. PMC 1735490. PMID 12807962.
  • Koschak A, Reimer D, Walter D, et al. (2003). "Cav1.4alpha1 subunits can form slowly inactivating dihydropyridine-sensitive L-type Ca2+ channels lacking Ca2+-dependent inactivation". J. Neurosci. 23 (14): 6041–9. doi:10.1523/JNEUROSCI.23-14-06041.2003. PMC 6740341. PMID 12853422.
  • Nakamura M, Ito S, Piao CH, et al. (2003). "Retinal and optic disc atrophy associated with a CACNA1F mutation in a Japanese family". Arch. Ophthalmol. 121 (7): 1028–33. doi:10.1001/archopht.121.7.1028. PMID 12860808.
  • Kotturi MF, Carlow DA, Lee JC, et al. (2004). "Identification and functional characterization of voltage-dependent calcium channels in T lymphocytes". J. Biol. Chem. 278 (47): 46949–60. doi:10.1074/jbc.M309268200. PMID 12954628.

External links

  • GeneReviews/NCBI/NIH/UW entry on X-Linked Congenital Stationary Night Blindness
  • CACNA1F+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
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Cl−: Chloride channel
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M+: TRP cation channel
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