FOXK2

Protein-coding gene in the species Homo sapiens
FOXK2
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1JXS, 2C6Y

Identifiers
AliasesFOXK2, ILF, ILF-1, ILF1, forkhead box K2, nGTBP
External IDsOMIM: 147685 MGI: 1916087 HomoloGene: 18748 GeneCards: FOXK2
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for FOXK2
Genomic location for FOXK2
Band17q25.3Start82,519,713 bp[1]
End82,644,662 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for FOXK2
Genomic location for FOXK2
Band11|11 E2Start121,259,990 bp[2]
End121,309,896 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastrocnemius muscle

  • sural nerve

  • ganglionic eminence

  • oocyte

  • sperm

  • skin of abdomen

  • popliteal artery

  • tibialis anterior muscle

  • anterior pituitary

  • stromal cell of endometrium
Top expressed in
  • secondary oocyte

  • cumulus cell

  • ascending aorta

  • renal corpuscle

  • spermatocyte

  • aortic valve

  • maxillary prominence

  • ganglionic eminence

  • barrel cortex

  • saccule
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • DNA-binding transcription factor activity
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • sequence-specific DNA binding
  • DNA binding
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • protein binding
  • magnesium ion binding
  • metal ion binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • transcription cis-regulatory region binding
  • DNA-binding transcription repressor activity, RNA polymerase II-specific
Cellular component
  • nucleus
  • nucleoplasm
  • cytoplasm
Biological process
  • regulation of transcription by RNA polymerase II
  • regulation of transcription, DNA-templated
  • positive regulation of transcription by RNA polymerase II
  • transcription, DNA-templated
  • transcription by RNA polymerase II
  • protein deubiquitination
  • anatomical structure morphogenesis
  • cell differentiation
  • negative regulation of transcription by RNA polymerase II
  • cellular glucose homeostasis
  • negative regulation of autophagy
  • regulation of glucose metabolic process
  • response to starvation
  • negative regulation of transcription, DNA-templated
  • positive regulation of transcription, DNA-templated
  • canonical glycolysis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3607

68837

Ensembl

ENSG00000141568

ENSMUSG00000039275

UniProt

Q01167

Q3UCQ1

RefSeq (mRNA)

NM_004514
NM_181430
NM_181431

NM_001080932
NM_001363033

RefSeq (protein)

NP_004505

NP_001074401
NP_001349962

Location (UCSC)Chr 17: 82.52 – 82.64 MbChr 11: 121.26 – 121.31 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Forkhead box protein K2 is a protein that in humans is encoded by the FOXK2 gene.[5][6]

The protein encoded by this gene contains a fork head DNA binding domain. This protein can bind to the purine-rich motifs of the HIV long terminal repeat (LTR), and to the similar purine-rich motif in the interleukin 2 (IL2) promoter. It may be involved in the regulation of viral and cellular promoter elements.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000141568 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000039275 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Durand DB, Shaw JP, Bush MR, Replogle RE, Belagaje R, Crabtree GR (Jul 1988). "Characterization of antigen receptor response elements within the interleukin-2 enhancer". Mol Cell Biol. 8 (4): 1715–24. doi:10.1128/MCB.8.4.1715. PMC 363332. PMID 3260003.
  6. ^ a b "Entrez Gene: FOXK2 forkhead box K2".

Further reading

  • Li C, Lusis AJ, Sparkes R, et al. (1992). "Characterization and chromosomal mapping of the gene encoding the cellular DNA binding protein ILF". Genomics. 13 (3): 665–71. doi:10.1016/0888-7543(92)90139-J. PMID 1339390.
  • Li C, Lai CF, Sigman DS, Gaynor RB (1991). "Cloning of a cellular factor, interleukin binding factor, that binds to NFAT-like motifs in the human immunodeficiency virus long terminal repeat". Proc. Natl. Acad. Sci. U.S.A. 88 (17): 7739–43. Bibcode:1991PNAS...88.7739L. doi:10.1073/pnas.88.17.7739. PMC 52378. PMID 1909027.
  • Nirula A, Moore DJ, Gaynor RB (1997). "Constitutive binding of the transcription factor interleukin-2 (IL-2) enhancer binding factor to the IL-2 promoter". J. Biol. Chem. 272 (12): 7736–45. doi:10.1074/jbc.272.12.7736. PMID 9065434.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Liu PP, Chen YC, Li C, et al. (2003). "Solution structure of the DNA-binding domain of interleukin enhancer binding factor 1 (FOXK1a)". Proteins. 49 (4): 543–53. doi:10.1002/prot.10227. PMID 12402362. S2CID 1142924.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Tsai KL, Huang CY, Chang CH, et al. (2006). "Crystal structure of the human FOXK1a-DNA complex and its implications on the diverse binding specificity of winged helix/forkhead proteins". J. Biol. Chem. 281 (25): 17400–9. doi:10.1074/jbc.M600478200. PMID 16624804.
  • Zody MC, Garber M, Adams DJ, et al. (2006). "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage". Nature. 440 (7087): 1045–9. Bibcode:2006Natur.440.1045Z. doi:10.1038/nature04689. PMC 2610434. PMID 16625196.
  • Beausoleil SA, Villén J, Gerber SA, et al. (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID 16964243. S2CID 14294292.

External links

  • FOXK2+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
  • Overview of all the structural information available in the PDB for UniProt: Q01167 (Forkhead box protein K2) at the PDBe-KB.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.


  • v
  • t
  • e
  • 1jxs: Solution Structure of the DNA-Binding Domain of Interleukin Enhancer Binding Factor
    1jxs: Solution Structure of the DNA-Binding Domain of Interleukin Enhancer Binding Factor
  • 2c6y: CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
    2c6y: CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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