SOX14

Protein-coding gene in the species Homo sapiens
SOX14
Identifiers
AliasesSOX14, SOX28, SRY-box 14, SRY-box transcription factor 14
External IDsOMIM: 604747 MGI: 98362 HomoloGene: 31224 GeneCards: SOX14
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for SOX14
Genomic location for SOX14
Band3q22.3Start137,764,315 bp[1]
End137,766,334 bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for SOX14
Genomic location for SOX14
Band9 E3.3|9 52.11 cMStart99,756,159 bp[2]
End99,758,223 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • placenta

  • hypothalamus

  • substantia nigra

  • prostate

  • spinal cord
Top expressed in
  • urethra

  • male urethra

  • mesencephalon

  • rhombencephalon

  • cerebellar cortex

  • hypothalamus

  • diencephalic nucleus

  • thalamus

  • list of thalamic nuclei

  • ureter
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • sequence-specific DNA binding
  • DNA binding
  • chromatin binding
  • protein binding
  • protein heterodimerization activity
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • nucleus
  • cellular component
Biological process
  • regulation of neuron migration
  • negative regulation of transcription, DNA-templated
  • regulation of transcription, DNA-templated
  • negative regulation of transcription by RNA polymerase II
  • transcription, DNA-templated
  • nervous system development
  • visual perception
  • entrainment of circadian clock
  • cell differentiation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8403

20669

Ensembl

ENSG00000168875

ENSMUSG00000053747

UniProt

O95416

Q04892

RefSeq (mRNA)

NM_004189

NM_011440

RefSeq (protein)

NP_004180

NP_035570

Location (UCSC)Chr 3: 137.76 – 137.77 MbChr 9: 99.76 – 99.76 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor SOX-14 is a protein that in humans is encoded by the SOX14 gene.[5][6]

Function

This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. Mutations in this gene are suggested to be responsible for the limb defects associated with blepharophimosis, ptosis, epicanthus inversus syndrome (BPES) and Mobius syndrome.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000168875 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000053747 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Arsic N, Rajic T, Stanojcic S, Goodfellow PN, Stevanovic M (Mar 1999). "Characterisation and mapping of the human SOX14 gene". Cytogenetics and Cell Genetics. 83 (1–2): 139–46. doi:10.1159/000015149. PMID 9925951. S2CID 24812709.
  6. ^ a b "Entrez Gene: SOX14 SRY (sex determining region Y)-box 14".

Further reading

  • Wilson M, Koopman P (August 2002). "Matching SOX: partner proteins and co-factors of the SOX family of transcriptional regulators". Current Opinion in Genetics & Development. 12 (4): 441–6. doi:10.1016/S0959-437X(02)00323-4. PMID 12100890.
  • Schepers GE, Teasdale RD, Koopman P (August 2002). "Twenty pairs of sox: extent, homology, and nomenclature of the mouse and human sox transcription factor gene families". Developmental Cell. 3 (2): 167–70. doi:10.1016/S1534-5807(02)00223-X. PMID 12194848.
  • Cremazy F, Soullier S, Berta P, Jay P (November 1998). "Further complexity of the human SOX gene family revealed by the combined use of highly degenerate primers and nested PCR". FEBS Letters. 438 (3): 311–4. doi:10.1016/S0014-5793(98)01294-0. PMID 9827568. S2CID 551497.
  • Malas S, Duthie S, Deloukas P, Episkopou V (September 1999). "The isolation and high-resolution chromosomal mapping of human SOX14 and SOX21; two members of the SOX gene family related to SOX1, SOX2, and SOX3". Mammalian Genome. 10 (9): 934–7. doi:10.1007/s003359901118. PMID 10441749. S2CID 27862567.
  • Wilmore HP, Smith MJ, Wilcox SA, Bell KM, Sinclair AH (March 2000). "SOX14 is a candidate gene for limb defects associated with BPES and Möbius syndrome". Human Genetics. 106 (3): 269–76. doi:10.1007/s004390051037. PMID 10798354.
  • Hargrave M, James K, Nield K, Toomes C, Georgas K, Sullivan T, Verzijl HT, Oley CA, Little M, De Jonghe P, Kwon JM, Kremer H, Dixon MJ, Timmerman V, Yamada T, Koopman P (April 2000). "Fine mapping of the neurally expressed gene SOX14 to human 3q23, relative to three congenital diseases". Human Genetics. 106 (4): 432–9. doi:10.1007/s004390000266. PMID 10830911. S2CID 20519444.
  • v
  • t
  • e
  • 1gt0: CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
    1gt0: CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
  • 1o4x: TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
    1o4x: TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies
Stub icon

This article on a gene on human chromosome 3 is a stub. You can help Wikipedia by expanding it.

  • v
  • t
  • e