Mothers against decapentaplegic homolog 5

Protein-coding gene in the species Homo sapiens
SMAD5
Identifiers
AliasesSMAD5, DWFC, JV5-1, MADH5, SMAD family member 5
External IDsOMIM: 603110 MGI: 1328787 HomoloGene: 4313 GeneCards: SMAD5
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for SMAD5
Genomic location for SMAD5
Band5q31.1Start136,132,845 bp[1]
End136,188,747 bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for SMAD5
Genomic location for SMAD5
Band13 B1|13 30.12 cMStart56,850,823 bp[2]
End56,890,190 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • caput epididymis

  • lactiferous duct

  • corpus epididymis

  • nipple

  • germinal epithelium

  • superficial temporal artery

  • Achilles tendon

  • endothelial cell

  • urethra

  • secondary oocyte
Top expressed in
  • maxillary prominence

  • Paneth cell

  • ureter

  • medial ganglionic eminence

  • hair follicle

  • left lung lobe

  • renal corpuscle

  • condyle

  • molar

  • endocardial cushion
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • DNA binding
  • DNA-binding transcription factor activity
  • metal ion binding
  • protein binding
  • ubiquitin protein ligase binding
  • DEAD/H-box RNA helicase binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • SMAD protein complex
  • transcription regulator complex
  • intracellular anatomical structure
  • nucleoplasm
  • nucleus
  • cytoplasm
  • cytosol
  • protein-containing complex
Biological process
  • germ cell development
  • ureteric bud development
  • cardiac muscle contraction
  • regulation of transcription, DNA-templated
  • SMAD protein signal transduction
  • embryonic pattern specification
  • ossification
  • cellular response to organic cyclic compound
  • cellular response to BMP stimulus
  • BMP signaling pathway
  • transcription, DNA-templated
  • positive regulation of transcription, DNA-templated
  • Mullerian duct regression
  • protein phosphorylation
  • cartilage development
  • positive regulation of osteoblast differentiation
  • erythrocyte differentiation
  • bone development
  • transforming growth factor beta receptor signaling pathway
  • signal transduction
  • positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
  • positive regulation of transcription by RNA polymerase II
  • osteoblast fate commitment
  • negative regulation of transcription by RNA polymerase II
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4090

17129

Ensembl

ENSG00000113658

ENSMUSG00000021540

UniProt

Q99717

P97454

RefSeq (mRNA)

NM_005903
NM_001001419
NM_001001420

NM_001164041
NM_001164042
NM_008541

RefSeq (protein)

NP_001001419
NP_001001420
NP_005894

NP_001157513
NP_001157514
NP_032567

Location (UCSC)Chr 5: 136.13 – 136.19 MbChr 13: 56.85 – 56.89 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Mothers against decapentaplegic homolog 5 also known as SMAD5 is a protein that in humans is encoded by the SMAD5 gene.[5]

SMAD5, as its name describes, is a homolog of the Drosophila gene: "Mothers against decapentaplegic", based on a tradition of such unusual naming within the gene research community.[6] It belongs to the SMAD family of proteins, which belong to the TGFβ superfamily of modulators. Like many other TGFβ family members SMAD5 is involved in cell signalling and modulates signals of bone morphogenetic proteins (BMP's). The binding of ligands causes the oligomerization and phosphorylation of the SMAD5 protein. SMAD5 is a receptor regulated SMAD (R-SMAD) and is activated by bone morphogenetic protein type 1 receptor kinase. It may play a role in the pathway where TGFβ is an inhibitor of hematopoietic progenitor cells.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000113658 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000021540 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Riggins GJ, Thiagalingam S, Rozenblum E, Weinstein CL, Kern SE, Hamilton SR, Willson JK, Markowitz SD, Kinzler KW, Vogelstein B (July 1996). "Mad-related genes in the human". Nat. Genet. 13 (3): 347–9. doi:10.1038/ng0796-347. PMID 8673135. S2CID 10124489.
  6. ^ "Sonic Hedgehog, DICER, and the Problem With Naming Genes", Sep 26, 2014, Michael White. psmag.com
  • v
  • t
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TGF beta superfamily of ligands
Ligand of ACVR or TGFBR
Ligand of BMPR
TGF beta receptors
(Activin, BMP, family)
TGFBR1:
TGFBR2:
TGFBR3:
Transducers/SMADLigand inhibitors
CoreceptorsOther
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies
  • v
  • t
  • e
TGFβ receptor superfamily modulators
Type I
ALK1 (ACVRL1)
  • Kinase inhibitors: K-02288
  • ML-347 (LDN-193719, VU0469381)
  • Other inhibitors: Disitertide
ALK2 (ACVR1A)
  • Kinase inhibitors: DMH-1
  • DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
  • ML-347 (LDN-193719, VU0469381)
ALK3 (BMPR1A)
  • Kinase inhibitors: DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
ALK4 (ACVR1B)
  • Kinase inhibitors: A 83-01
  • SB-431542
  • SB-505124
ALK5 (TGFβR1)
ALK6 (BMPR1B)
  • Kinase inhibitors: DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
ALK7 (ACVR1C)
  • Antagonists: Lefty (1, 2)
  • Kinase inhibitors: A 83-01
  • SB-431542
  • SB-505124
Type II
TGFβR2
  • Kinase inhibitors: DMH-2
  • LY-364947
BMPR2
ACVR2A (ACVR2)
ACVR2B
  • Decoy receptors: Ramatercept
AMHR2 (AMHR)
Type III
TGFβR3 (β-glycan)
Unsorted


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