Mothers against decapentaplegic homolog 1

Protein-coding gene in the species Homo sapiens
SMAD1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1KHU, 2LAW, 2LAX, 2LAY, 2LAZ, 2LB0, 2LB1, 3Q47, 3Q4A

Identifiers
AliasesSMAD1, BSP-1, BSP1, JV4-1, JV41, MADH1, MADR1, SMAD family member 1
External IDsOMIM: 601595 MGI: 109452 HomoloGene: 21196 GeneCards: SMAD1
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[1]
Chromosome 8 (mouse)
Genomic location for SMAD1
Genomic location for SMAD1
Band8|8 C1Start80,065,024 bp[1]
End80,126,147 bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
    n/a
Top expressed in
  • Paneth cell

  • ureter

  • conjunctival fornix

  • fossa

  • medullary collecting duct

  • internal carotid artery

  • lacrimal gland

  • hair follicle

  • condyle

  • seminal vesicula
BioGPS
More reference expression data
Gene ontology
Molecular function
  • DNA binding
  • co-SMAD binding
  • protein homodimerization activity
  • I-SMAD binding
  • DNA-binding transcription factor activity
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • metal ion binding
  • protein binding
  • identical protein binding
  • protein heterodimerization activity
  • protein kinase binding
  • sequence-specific DNA binding
  • DEAD/H-box RNA helicase binding
  • primary miRNA binding
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • cytoplasm
  • integral component of membrane
  • SMAD protein complex
  • cytosol
  • transcription regulator complex
  • intracellular anatomical structure
  • nucleoplasm
  • nuclear inner membrane
  • nucleus
  • protein-containing complex
Biological process
  • positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
  • SMAD protein complex assembly
  • ureteric bud development
  • regulation of transcription, DNA-templated
  • SMAD protein signal transduction
  • embryonic pattern specification
  • regulation of transcription by RNA polymerase II
  • cellular response to organic cyclic compound
  • hindbrain development
  • cellular response to BMP stimulus
  • cardiac muscle cell proliferation
  • BMP signaling pathway
  • transcription, DNA-templated
  • MAPK cascade
  • protein phosphorylation
  • gamete generation
  • cartilage development
  • positive regulation of gene expression
  • positive regulation of osteoblast differentiation
  • positive regulation of cartilage development
  • primary miRNA processing
  • mesodermal cell fate commitment
  • inflammatory response
  • bone development
  • transforming growth factor beta receptor signaling pathway
  • midbrain development
  • signal transduction
  • negative regulation of cell population proliferation
  • positive regulation of transcription by RNA polymerase II
  • osteoblast fate commitment
  • homeostatic process
  • transcription by RNA polymerase II
  • positive regulation of pri-miRNA transcription by RNA polymerase II
  • protein deubiquitination
  • positive regulation of sprouting angiogenesis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4086

17125

Ensembl

ENSG00000170365

ENSMUSG00000031681

UniProt

Q15797

P70340

RefSeq (mRNA)

NM_001003688
NM_005900

NM_008539

RefSeq (protein)
NP_001003688
NP_005891
NP_001341740
NP_001341741
NP_001341742

NP_001341743
NP_001341745
NP_001341746

NP_032565

Location (UCSC)n/aChr 8: 80.07 – 80.13 Mb
PubMed search[2][3]
Wikidata
View/Edit HumanView/Edit Mouse

Mothers against decapentaplegic homolog 1 also known as SMAD family member 1 or SMAD1 is a protein that in humans is encoded by the SMAD1 gene.[4][5]

Nomenclature

SMAD1 belongs to the SMAD, a family of proteins similar to the gene products of the Drosophila gene 'mothers against decapentaplegic' (Mad) and the C. elegans gene Sma.[citation needed] The name is a combination of the two; and based on a tradition of such unusual naming within the gene research community.[6]

It was found that a mutation in the 'Drosophila' gene, MAD, in the mother, repressed the gene, decapentaplegic, in the embryo. Mad mutations can be placed in an allelic series based on the relative severity of the maternal effect enhancement of weak dpp alleles, thus explaining the name Mothers against dpp.[7]

Function

SMAD proteins are signal transducers and transcriptional modulators that mediate multiple signaling pathways. This protein mediates the signals of the bone morphogenetic proteins (BMPs), which are involved in a range of biological activities including cell growth, apoptosis, morphogenesis, development and immune responses. In response to BMP ligands, this protein can be phosphorylated and activated by the BMP receptor kinase. The phosphorylated form of this protein forms a complex with SMAD4, which is important for its function in the transcription regulation. This protein is a target for SMAD-specific E3 ubiquitin ligases, such as SMURF1 and SMURF2, and undergoes ubiquitination and proteasome-mediated degradation. Alternatively spliced transcript variants encoding the same protein have been observed.[8]

SMAD1 is a receptor regulated SMAD (R-SMAD) and is activated by bone morphogenetic protein type 1 receptor kinase.

References

  1. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000031681 - Ensembl, May 2017
  2. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ Hoodless PA, Haerry T, Abdollah S, Stapleton M, O'Connor MB, Attisano L, Wrana JL (May 1996). "MADR1, a MAD-related protein that functions in BMP2 signaling pathways". Cell. 85 (4): 489–500. doi:10.1016/S0092-8674(00)81250-7. PMID 8653785. S2CID 2275955.
  5. ^ Riggins GJ, Thiagalingam S, Rozenblum E, Weinstein CL, Kern SE, Hamilton SR, Willson JK, Markowitz SD, Kinzler KW, Vogelstein B (July 1996). "Mad-related genes in the human". Nature Genetics. 13 (3): 347–9. doi:10.1038/ng0796-347. PMID 8673135. S2CID 10124489.
  6. ^ "Sonic Hedgehog, DICER, and the Problem With Naming Genes", Sep 26, 2014, Michael White. psmag.com
  7. ^ "Interactive fly, Drosophila".
  8. ^ "Entrez Gene: SMAD1 SMAD family member 1".

External links

  • v
  • t
  • e
TGF beta superfamily of ligands
Ligand of ACVR or TGFBR
Ligand of BMPR
TGF beta receptors
(Activin, BMP, family)
TGFBR1:
TGFBR2:
TGFBR3:
Transducers/SMADLigand inhibitors
CoreceptorsOther
  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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  • v
  • t
  • e
  • v
  • t
  • e
TGFβ receptor superfamily modulators
Type I
ALK1 (ACVRL1)
  • Kinase inhibitors: K-02288
  • ML-347 (LDN-193719, VU0469381)
  • Other inhibitors: Disitertide
ALK2 (ACVR1A)
  • Kinase inhibitors: DMH-1
  • DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
  • ML-347 (LDN-193719, VU0469381)
ALK3 (BMPR1A)
  • Kinase inhibitors: DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
ALK4 (ACVR1B)
  • Kinase inhibitors: A 83-01
  • SB-431542
  • SB-505124
ALK5 (TGFβR1)
ALK6 (BMPR1B)
  • Kinase inhibitors: DMH-2
  • Dorsomorphin (BML-275)
  • K-02288
ALK7 (ACVR1C)
  • Antagonists: Lefty (1, 2)
  • Kinase inhibitors: A 83-01
  • SB-431542
  • SB-505124
Type II
TGFβR2
  • Kinase inhibitors: DMH-2
  • LY-364947
BMPR2
ACVR2A (ACVR2)
ACVR2B
  • Decoy receptors: Ramatercept
AMHR2 (AMHR)
Type III
TGFβR3 (β-glycan)
Unsorted