NFKB1

Protein-coding gene in the species Homo sapiens
NFKB1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1MDI, 1MDJ, 1MDK, 1NFI, 1SVC, 2DBF, 2O61, 3GUT

Identifiers
AliasesNFKB1, EBP-1, KBF1, NF-kB1, NF-kappa-B, NF-kappaB, NFKB-p105, NFKB-p50, NFkappaB, p105, p50, CVID12, nuclear factor kappa B subunit 1, NF-kappa-B1, NF-kB, NF-kappabeta
External IDsOMIM: 164011 MGI: 97312 HomoloGene: 2971 GeneCards: NFKB1
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for NFKB1
Genomic location for NFKB1
Band4q24Start102,501,331 bp[1]
End102,617,302 bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for NFKB1
Genomic location for NFKB1
Band3 G3|3 62.82 cMStart135,290,416 bp[2]
End135,397,308 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • monocyte

  • appendix

  • gallbladder

  • bone marrow cells

  • rectum

  • middle frontal gyrus

  • blood

  • lymph node

  • upper lobe of left lung
Top expressed in
  • spleen

  • thymus

  • lymph node

  • lip

  • right lung

  • saccule

  • bone marrow

  • corneal stroma

  • left lung

  • otic placode
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • DNA-binding transcription factor activity
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding
  • transcription factor binding
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • DNA-binding transcription repressor activity, RNA polymerase II-specific
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • protein homodimerization activity
  • chromatin binding
  • protein binding
  • DNA binding
  • sequence-specific DNA binding
  • actinin binding
  • identical protein binding
  • transcription cis-regulatory region binding
  • protein heterodimerization activity
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • cytoplasm
  • mitochondrion
  • nucleus
  • I-kappaB/NF-kappaB complex
  • nucleoplasm
  • extracellular region
  • cytosol
  • secretory granule lumen
  • specific granule lumen
Biological process
  • cellular response to interleukin-6
  • positive regulation of canonical Wnt signaling pathway
  • regulation of transcription by RNA polymerase II
  • transcription by RNA polymerase II
  • negative regulation of vitamin D biosynthetic process
  • Fc-epsilon receptor signaling pathway
  • cellular response to mechanical stimulus
  • NIK/NF-kappaB signaling
  • stress-activated MAPK cascade
  • negative regulation of inflammatory response
  • apoptotic process
  • response to muscle stretch
  • regulation of transcription, DNA-templated
  • stimulatory C-type lectin receptor signaling pathway
  • transcription, DNA-templated
  • positive regulation of transcription, DNA-templated
  • negative regulation of calcidiol 1-monooxygenase activity
  • positive regulation of hyaluronan biosynthetic process
  • membrane protein intracellular domain proteolysis
  • inflammatory response
  • I-kappaB kinase/NF-kappaB signaling
  • positive regulation of miRNA metabolic process
  • cellular response to nicotine
  • negative regulation of transcription by RNA polymerase II
  • positive regulation of macrophage derived foam cell differentiation
  • positive regulation of NF-kappaB transcription factor activity
  • negative regulation of cholesterol transport
  • negative regulation of transcription, DNA-templated
  • negative regulation of cytokine production
  • positive regulation of lipid storage
  • cellular response to dsRNA
  • T cell receptor signaling pathway
  • positive regulation of type I interferon production
  • positive regulation of transcription by RNA polymerase II
  • signal transduction
  • cellular response to lipopolysaccharide
  • cellular response to interleukin-1
  • innate immune response
  • negative regulation of apoptotic process
  • negative regulation of gene expression
  • neutrophil degranulation
  • cellular response to tumor necrosis factor
  • cellular response to angiotensin
  • interleukin-1-mediated signaling pathway
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4790

18033

Ensembl

ENSG00000109320

ENSMUSG00000028163

UniProt

P19838

P25799

RefSeq (mRNA)
NM_001165412
NM_003998
NM_001319226
NM_001382625
NM_001382626

NM_001382627
NM_001382628

NM_008689

RefSeq (protein)
NP_001158884
NP_001306155
NP_003989
NP_001369554
NP_001369555

NP_001369556
NP_001369557
NP_001158884.1
NP_001306155.1

NP_032715

Location (UCSC)Chr 4: 102.5 – 102.62 MbChr 3: 135.29 – 135.4 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear factor NF-kappa-B p105 subunit is a protein that in humans is encoded by the NFKB1 gene.[5]

This gene encodes a 105 kD protein which can undergo cotranslational processing by the 26S proteasome to produce a 50 kD protein. The 105 kD protein is a Rel protein-specific transcription inhibitor and the 50 kD protein is a DNA binding subunit of the NF-kappaB (NF-κB) protein complex. NF-κB is a transcription factor that is activated by various intra- and extra-cellular stimuli such as cytokines, oxidant-free radicals, ultraviolet irradiation, and bacterial or viral products. Activated NF-κB translocates into the nucleus and stimulates the expression of genes involved in a wide variety of biological functions; over 200 known genes are targets of NF-κB in various cell types, under specific conditions. Inappropriate activation of NF-κB has been associated with a number of inflammatory diseases while persistent inhibition of NF-κB leads to inappropriate immune cell development or delayed cell growth.[6]

Interactions

NFKB1 has been shown to interact with:

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000109320 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000028163 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Meyer R, Hatada EN, Hohmann HP, Haiker M, Bartsch C, Röthlisberger U, Lahm HW, Schlaeger EJ, van Loon AP, Scheidereit C (March 1991). "Cloning of the DNA-binding subunit of human nuclear factor kappa B: the level of its mRNA is strongly regulated by phorbol ester or tumor necrosis factor alpha". Proc Natl Acad Sci U S A. 88 (3): 966–70. Bibcode:1991PNAS...88..966M. doi:10.1073/pnas.88.3.966. PMC 50935. PMID 1992489.
  6. ^ "Entrez Gene: NF-κB nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)".
  7. ^ a b Heissmeyer V, Krappmann D, Wulczyn FG, Scheidereit C (September 1999). "NF-kappaB p105 is a target of IkappaB kinases and controls signal induction of Bcl-3-p50 complexes". EMBO J. 18 (17): 4766–78. doi:10.1093/emboj/18.17.4766. PMC 1171549. PMID 10469655.
  8. ^ Thornburg NJ, Pathmanathan R, Raab-Traub N (December 2003). "Activation of nuclear factor-kappaB p50 homodimer/Bcl-3 complexes in nasopharyngeal carcinoma". Cancer Res. 63 (23): 8293–301. PMID 14678988.
  9. ^ Naumann M, Wulczyn FG, Scheidereit C (January 1993). "The NF-kappa B precursor p105 and the proto-oncogene product Bcl-3 are I kappa B molecules and control nuclear translocation of NF-kappa B". EMBO J. 12 (1): 213–22. doi:10.1002/j.1460-2075.1993.tb05647.x. PMC 413194. PMID 8428580.
  10. ^ Zhong H, May MJ, Jimi E, Ghosh S (March 2002). "The phosphorylation status of nuclear NF-kappa B determines its association with CBP/p300 or HDAC-1". Mol. Cell. 9 (3): 625–36. doi:10.1016/s1097-2765(02)00477-x. PMID 11931769.
  11. ^ Noro B, Licheri B, Sgarra R, Rustighi A, Tessari MA, Chau KY, Ono SJ, Giancotti V, Manfioletti G (April 2003). "Molecular dissection of the architectural transcription factor HMGA2". Biochemistry. 42 (15): 4569–77. doi:10.1021/bi026605k. PMID 12693954. S2CID 39605320.
  12. ^ Heissmeyer V, Krappmann D, Hatada EN, Scheidereit C (February 2001). "Shared pathways of IkappaB kinase-induced SCF(betaTrCP)-mediated ubiquitination and degradation for the NF-kappaB precursor p105 and IkappaBalpha". Mol. Cell. Biol. 21 (4): 1024–35. doi:10.1128/MCB.21.4.1024-1035.2001. PMC 99557. PMID 11158290.
  13. ^ Besta F, Massberg S, Brand K, Müller E, Page S, Grüner S, Lorenz M, Sadoul K, Kolanus W, Lengyel E, Gawaz M (October 2002). "Role of beta(3)-endonexin in the regulation of NF-kappaB-dependent expression of urokinase-type plasminogen activator receptor". J. Cell Sci. 115 (Pt 20): 3879–88. doi:10.1242/jcs.00081. PMID 12244126.
  14. ^ Hay DC, Kemp GD, Dargemont C, Hay RT (May 2001). "Interaction between hnRNPA1 and IkappaBalpha is required for maximal activation of NF-kappaB-dependent transcription". Mol. Cell. Biol. 21 (10): 3482–90. doi:10.1128/MCB.21.10.3482-3490.2001. PMC 100270. PMID 11313474.
  15. ^ Malek S, Huxford T, Ghosh G (September 1998). "Ikappa Balpha functions through direct contacts with the nuclear localization signals and the DNA binding sequences of NF-kappaB". J. Biol. Chem. 273 (39): 25427–35. doi:10.1074/jbc.273.39.25427. PMID 9738011.
  16. ^ Ferrier R, Nougarede R, Doucet S, Kahn-Perles B, Imbert J, Mathieu-Mahul D (January 1999). "Physical interaction of the bHLH LYL1 protein and NF-kappaB1 p105". Oncogene. 18 (4): 995–1005. doi:10.1038/sj.onc.1202374. PMID 10023675.
  17. ^ Baek SH, Ohgi KA, Rose DW, Koo EH, Glass CK, Rosenfeld MG (July 2002). "Exchange of N-CoR corepressor and Tip60 coactivator complexes links gene expression by NF-kappaB and beta-amyloid precursor protein". Cell. 110 (1): 55–67. doi:10.1016/S0092-8674(02)00809-7. PMID 12150997. S2CID 17679498.
  18. ^ a b c d Bouwmeester T, Bauch A, Ruffner H, Angrand PO, Bergamini G, Croughton K, Cruciat C, Eberhard D, Gagneur J, Ghidelli S, Hopf C, Huhse B, Mangano R, Michon AM, Schirle M, Schlegl J, Schwab M, Stein MA, Bauer A, Casari G, Drewes G, Gavin AC, Jackson DB, Joberty G, Neubauer G, Rick J, Kuster B, Superti-Furga G (February 2004). "A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway". Nat. Cell Biol. 6 (2): 97–105. doi:10.1038/ncb1086. PMID 14743216. S2CID 11683986.
  19. ^ Belich MP, Salmerón A, Johnston LH, Ley SC (January 1999). "TPL-2 kinase regulates the proteolysis of the NF-kappaB-inhibitory protein NF-kappaB1 p105". Nature. 397 (6717): 363–8. Bibcode:1999Natur.397..363B. doi:10.1038/16946. PMID 9950430. S2CID 4391108.
  20. ^ Heppner C, Bilimoria KY, Agarwal SK, Kester M, Whitty LJ, Guru SC, Chandrasekharappa SC, Collins FS, Spiegel AM, Marx SJ, Burns AL (August 2001). "The tumor suppressor protein menin interacts with NF-kappaB proteins and inhibits NF-kappaB-mediated transactivation". Oncogene. 20 (36): 4917–25. doi:10.1038/sj.onc.1204529. PMID 11526476.
  21. ^ Li Z, Nabel GJ (October 1997). "A new member of the I kappaB protein family, I kappaB epsilon, inhibits RelA (p65)-mediated NF-kappaB transcription". Mol. Cell. Biol. 17 (10): 6184–90. doi:10.1128/mcb.17.10.6184. PMC 232469. PMID 9315679.
  22. ^ Guan E, Wang J, Laborda J, Norcross M, Baeuerle PA, Hoffman T (May 1996). "T cell leukemia-associated human Notch/translocation-associated Notch homologue has I kappa B-like activity and physically interacts with nuclear factor-kappa B proteins in T cells". J. Exp. Med. 183 (5): 2025–32. doi:10.1084/jem.183.5.2025. PMC 2192574. PMID 8642313.
  23. ^ Wang J, Shelly L, Miele L, Boykins R, Norcross MA, Guan E (July 2001). "Human Notch-1 inhibits NF-kappa B activity in the nucleus through a direct interaction involving a novel domain". J. Immunol. 167 (1): 289–95. doi:10.4049/jimmunol.167.1.289. PMID 11418662.
  24. ^ Lee SK, Na SY, Jung SY, Choi JE, Jhun BH, Cheong J, Meltzer PS, Lee YC, Lee JW (June 2000). "Activating protein-1, nuclear factor-kappaB, and serum response factor as novel target molecules of the cancer-amplified transcription coactivator ASC-2". Mol. Endocrinol. 14 (6): 915–25. doi:10.1210/mend.14.6.0471. PMID 10847592.
  25. ^ Na SY, Lee SK, Han SJ, Choi HS, Im SY, Lee JW (May 1998). "Steroid receptor coactivator-1 interacts with the p50 subunit and coactivates nuclear factor kappaB-mediated transactivations". J. Biol. Chem. 273 (18): 10831–4. doi:10.1074/jbc.273.18.10831. PMID 9556555.
  26. ^ Palvimo JJ, Reinikainen P, Ikonen T, Kallio PJ, Moilanen A, Jänne OA (September 1996). "Mutual transcriptional interference between RelA and androgen receptor". J. Biol. Chem. 271 (39): 24151–6. doi:10.1074/jbc.271.39.24151. PMID 8798655.
  27. ^ Yu Z, Zhang W, Kone BC (October 2002). "Signal transducers and activators of transcription 3 (STAT3) inhibits transcription of the inducible nitric oxide synthase gene by interacting with nuclear factor kappaB". Biochem. J. 367 (Pt 1): 97–105. doi:10.1042/BJ20020588. PMC 1222853. PMID 12057007.
  28. ^ Shen CH, Stavnezer J (June 1998). "Interaction of stat6 and NF-kappaB: direct association and synergistic activation of interleukin-4-induced transcription". Mol. Cell. Biol. 18 (6): 3395–404. doi:10.1128/mcb.18.6.3395. PMC 108921. PMID 9584180.
  29. ^ Ayroldi E, Migliorati G, Bruscoli S, Marchetti C, Zollo O, Cannarile L, D'Adamio F, Riccardi C (August 2001). "Modulation of T-cell activation by the glucocorticoid-induced leucine zipper factor via inhibition of nuclear factor kappaB". Blood. 98 (3): 743–53. doi:10.1182/blood.v98.3.743. PMID 11468175.

Further reading

  • Baldwin AS (1996). "The NF-kappa B and I kappa B proteins: new discoveries and insights". Annu. Rev. Immunol. 14: 649–83. doi:10.1146/annurev.immunol.14.1.649. PMID 8717528.
  • Snásel J, Pichová I (1997). "The cleavage of host cell proteins by HIV-1 protease". Folia Biol. (Praha). 42 (5): 227–30. doi:10.1007/BF02818986. PMID 8997639. S2CID 7617882.
  • Chen F, Castranova V, Shi X, Demers LM (1999). "New insights into the role of nuclear factor-kappaB, a ubiquitous transcription factor in the initiation of diseases". Clin. Chem. 45 (1): 7–17. doi:10.1093/clinchem/45.1.7. PMID 9895331.
  • Bottex-Gauthier C, Pollet S, Favier A, Vidal DR (2002). "[The Rel/NF-kappa-B transcription factors: complex role in cell regulation]". Pathol. Biol. 50 (3): 204–11. doi:10.1016/s0369-8114(02)00289-4. PMID 11980335.
  • Garg A, Aggarwal BB (2002). "Nuclear transcription factor-kappaB as a target for cancer drug development". Leukemia. 16 (6): 1053–68. doi:10.1038/sj.leu.2402482. PMID 12040437.
  • Sun Z, Andersson R (2003). "NF-kappaB activation and inhibition: a review". Shock. 18 (2): 99–106. doi:10.1097/00024382-200208000-00001. PMID 12166787.
  • Mercurio AM (2003). "Invasive skin carcinoma--Ras and alpha6beta4 integrin lead the way". Cancer Cell. 3 (3): 201–2. doi:10.1016/S1535-6108(03)00049-7. PMID 12676577.
  • Sun SC, Xiao G (2004). "Deregulation of NF-kappaB and its upstream kinases in cancer". Cancer Metastasis Rev. 22 (4): 405–22. doi:10.1023/A:1023733231406. PMID 12884915. S2CID 44227245.
  • Kucharczak J, Simmons MJ, Fan Y, Gélinas C (2004). "To be, or not to be: NF-kappaB is the answer--role of Rel/NF-kappaB in the regulation of apoptosis". Oncogene. 22 (56): 8961–82. doi:10.1038/sj.onc.1207230. PMID 14663476.
  • Suh J, Rabson AB (2004). "NF-kappaB activation in human prostate cancer: important mediator or epiphenomenon?". J. Cell. Biochem. 91 (1): 100–17. doi:10.1002/jcb.10729. PMID 14689584. S2CID 84116960.
  • Muthumani K, Desai BM, Hwang DS, Choo AY, Laddy DJ, Thieu KP, Rao RG, Weiner DB (2004). "HIV-1 Vpr and anti-inflammatory activity". DNA Cell Biol. 23 (4): 239–47. doi:10.1089/104454904773819824. PMID 15142381.
  • Schmitz ML, Mattioli I, Buss H, Kracht M (2005). "NF-kappaB: a multifaceted transcription factor regulated at several levels". ChemBioChem. 5 (10): 1348–58. doi:10.1002/cbic.200400144. PMID 15457532. S2CID 85775279.
  • Pise-Masison CA, Brady JN (2006). "Setting the stage for transformation: HTLV-1 Tax inhibition of p53 function". Front. Biosci. 10 (1–3): 919–30. doi:10.2741/1586. PMID 15569630. S2CID 35215552.
  • Joseph AM, Kumar M, Mitra D (2005). "Nef: "necessary and enforcing factor" in HIV infection". Curr. HIV Res. 3 (1): 87–94. doi:10.2174/1570162052773013. PMID 15638726.
  • Le Rouzic E, Benichou S (2006). "The Vpr protein from HIV-1: distinct roles along the viral life cycle". Retrovirology. 2: 11. doi:10.1186/1742-4690-2-11. PMC 554975. PMID 15725353.
  • Zhao RY, Elder RT (2005). "Viral infections and cell cycle G2/M regulation". Cell Res. 15 (3): 143–9. doi:10.1038/sj.cr.7290279. PMID 15780175.
  • Zhao RY, Bukrinsky M, Elder RT (2005). "HIV-1 viral protein R (Vpr) & host cellular responses". Indian J. Med. Res. 121 (4): 270–86. PMID 15817944.
  • Muthumani K, Choo AY, Hwang DS, Ugen KE, Weiner DB (2006). "HIV-1 Vpr: enhancing sensitivity of tumors to apoptosis". Current Drug Delivery. 1 (4): 335–44. doi:10.2174/1567201043334614. PMID 16305395.
  • Courtois G, Smahi A (2006). "NF-kappaB-related genetic diseases". Cell Death Differ. 13 (5): 843–51. doi:10.1038/sj.cdd.4401841. PMID 16397577.
  • Mattson MP, Meffert MK (2006). "Roles for NF-kappaB in nerve cell survival, plasticity, and disease". Cell Death Differ. 13 (5): 852–60. doi:10.1038/sj.cdd.4401837. PMID 16397579.
  • Schmitz ML, Krappmann D (2006). "Controlling NF-kappaB activation in T cells by costimulatory receptors". Cell Death Differ. 13 (5): 834–42. doi:10.1038/sj.cdd.4401845. PMID 16410801.
  • Janssens S, Tschopp J (2006). "Signals from within: the DNA-damage-induced NF-kappaB response". Cell Death Differ. 13 (5): 773–84. doi:10.1038/sj.cdd.4401843. PMID 16410802.
  • Perkins ND, Gilmore TD (2006). "Good cop, bad cop: the different faces of NF-kappaB". Cell Death Differ. 13 (5): 759–72. doi:10.1038/sj.cdd.4401838. PMID 16410803.
  • Weil R, Israël A (2006). "Deciphering the pathway from the TCR to NF-kappaB". Cell Death Differ. 13 (5): 826–33. doi:10.1038/sj.cdd.4401856. PMID 16439988.
  • Kim HJ, Hawke N, Baldwin AS (2006). "NF-kappaB and IKK as therapeutic targets in cancer". Cell Death Differ. 13 (5): 738–47. doi:10.1038/sj.cdd.4401877. PMID 16485028.
  • Braun T, Carvalho G, Fabre C, Grosjean J, Fenaux P, Kroemer G (2006). "Targeting NF-kappaB in hematologic malignancies". Cell Death Differ. 13 (5): 748–58. doi:10.1038/sj.cdd.4401874. PMID 16498458.
  • Bottero V, Withoff S, Verma IM (2006). "NF-kappaB and the regulation of hematopoiesis". Cell Death Differ. 13 (5): 785–97. doi:10.1038/sj.cdd.4401888. PMID 16528384.
  • Xiao G (2007). "Autophagy and NF-κB fight for fate". Cytokine Growth Factor Rev. 18 (3–4): 233–43. doi:10.1016/j.cytogfr.2007.04.006. PMC 2810660. PMID 17485237.

External links

  • v
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  • e
  • 1bfs: STRUCTURE OF NF-KB P50 HOMODIMER BOUND TO A KB SITE
    1bfs: STRUCTURE OF NF-KB P50 HOMODIMER BOUND TO A KB SITE
  • 1ikn: IKAPPABALPHA/NF-KAPPAB COMPLEX
    1ikn: IKAPPABALPHA/NF-KAPPAB COMPLEX
  • 1le5: Crystal structure of a NF-kB heterodimer bound to an IFNb-kB
    1le5: Crystal structure of a NF-kB heterodimer bound to an IFNb-kB
  • 1le9: Crystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB siti
    1le9: Crystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB siti
  • 1lei: The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription
    1lei: The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription
  • 1nfi: I-KAPPA-B-ALPHA/NF-KAPPA-B COMPLEX
    1nfi: I-KAPPA-B-ALPHA/NF-KAPPA-B COMPLEX
  • 1nfk: STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
    1nfk: STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
  • 1ooa: CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER
    1ooa: CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER
  • 1svc: NFKB P50 HOMODIMER BOUND TO DNA
    1svc: NFKB P50 HOMODIMER BOUND TO DNA
  • 1u36: Crystal structure of WLAC mutant of dimerisation domain of NF-kB p50 transcription factor
    1u36: Crystal structure of WLAC mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1u3j: Crystal structure of MLAV mutant of dimerisation domain of NF-kB p50 transcription factor
    1u3j: Crystal structure of MLAV mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1u3y: Crystal structure of ILAC mutant of dimerisation domain of NF-kB p50 transcription factor
    1u3y: Crystal structure of ILAC mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1u3z: Crystal structure of MLAC mutant of dimerisation domain of NF-kB p50 transcription factor
    1u3z: Crystal structure of MLAC mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1u41: Crystal structure of YLGV mutant of dimerisation domain of NF-kB p50 transcription factor
    1u41: Crystal structure of YLGV mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1u42: Crystal structure of MLAM mutant of dimerisation domain of NF-kB p50 transcription factor
    1u42: Crystal structure of MLAM mutant of dimerisation domain of NF-kB p50 transcription factor
  • 1vkx: CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
    1vkx: CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
  • 2dbf: Solution structure of the Death domain in human Nuclear factor NF-kappa-B p105 subunit
    2dbf: Solution structure of the Death domain in human Nuclear factor NF-kappa-B p105 subunit
  • 2i9t: Structure of NF-kB p65-p50 heterodimer bound to PRDII element of B-interferon promoter
    2i9t: Structure of NF-kB p65-p50 heterodimer bound to PRDII element of B-interferon promoter
  • v
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  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies

This article incorporates text from the United States National Library of Medicine, which is in the public domain.